Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G032500.1 | Wheat | plastid | 98.81 | 98.43 |
| HORVU6Hr1G005720.1 | Barley | extracellular | 72.73 | 97.1 |
| TraesCS6B01G045600.1 | Wheat | golgi, plasma membrane, vacuole | 96.64 | 96.26 |
| HORVU6Hr1G005750.1 | Barley | cytosol, plastid | 18.77 | 94.06 |
| TraesCS6B01G046500.1 | Wheat | plasma membrane | 90.32 | 90.14 |
| TraesCS6B01G046600.1 | Wheat | plasma membrane | 90.32 | 89.78 |
| TraesCS6B01G046700.1 | Wheat | plasma membrane | 89.13 | 88.78 |
| TraesCS6B01G044300.1 | Wheat | plasma membrane | 80.63 | 80.47 |
| TraesCS6B01G044200.1 | Wheat | plasma membrane | 80.63 | 80.47 |
| TraesCS6B01G044100.1 | Wheat | plastid | 80.43 | 80.28 |
| TraesCS6B01G044000.1 | Wheat | plasma membrane | 79.05 | 78.59 |
| TraesCS6B01G044500.1 | Wheat | plastid | 71.15 | 74.23 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 77.87 | 73.92 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 77.87 | 73.92 |
| Zm00001d054057_P001 | Maize | extracellular | 76.48 | 73.86 |
| Zm00001d054060_P001 | Maize | plastid | 76.28 | 73.66 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 76.68 | 73.62 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 76.68 | 73.62 |
| TraesCS6B01G044400.1 | Wheat | plastid | 80.63 | 72.21 |
| Zm00001d014976_P001 | Maize | plasma membrane | 73.52 | 71.26 |
| EES04350 | Sorghum | plastid | 74.11 | 70.09 |
| PGSC0003DMT400050658 | Potato | plasma membrane | 59.29 | 69.12 |
| KRH30604 | Soybean | peroxisome | 69.96 | 66.79 |
| KRH26509 | Soybean | peroxisome | 69.96 | 66.79 |
| KRH22855 | Soybean | peroxisome | 69.76 | 66.6 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 65.81 | 66.33 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 23.91 | 66.12 |
| VIT_08s0040g01500.t01 | Wine grape | golgi, peroxisome, plasma membrane, plastid | 68.97 | 65.72 |
| GSMUA_Achr11P... | Banana | cytosol | 62.45 | 65.56 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 68.38 | 65.28 |
| PGSC0003DMT400002924 | Potato | plasma membrane | 67.79 | 64.72 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 63.64 | 64.66 |
| PGSC0003DMT400031306 | Potato | plasma membrane | 45.06 | 64.59 |
| Bra034142.1-P | Field mustard | plasma membrane | 19.57 | 64.29 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 31.62 | 64.26 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 66.6 | 64.19 |
| Solyc11g069750.1.1 | Tomato | extracellular | 66.21 | 63.81 |
| PGSC0003DMT400031304 | Potato | plasma membrane | 66.21 | 63.21 |
| AT5G60770.1 | Thale cress | plasma membrane | 65.81 | 63.19 |
| CDY72274 | Canola | plasma membrane | 44.07 | 63.17 |
| PGSC0003DMT400092589 | Potato | plasma membrane | 66.6 | 63.11 |
| CDY70994 | Canola | golgi, plasma membrane | 43.87 | 62.89 |
| CDY68730 | Canola | endoplasmic reticulum, plasma membrane | 48.81 | 62.85 |
| CDY06298 | Canola | golgi, peroxisome, plasma membrane | 52.17 | 62.71 |
| AT1G08090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 65.61 | 62.64 |
| Bra030713.1-P | Field mustard | golgi, peroxisome, plasma membrane | 65.61 | 62.64 |
| CDY06299 | Canola | golgi, peroxisome, plasma membrane | 62.45 | 62.45 |
| Bra031611.1-P | Field mustard | golgi, peroxisome, plasma membrane | 62.45 | 62.45 |
| Bra002453.1-P | Field mustard | golgi, peroxisome, plasma membrane, plastid | 65.02 | 62.43 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 18.97 | 62.34 |
| CDY32821 | Canola | cytosol, peroxisome, plasma membrane | 57.11 | 62.28 |
| CDY22704 | Canola | cytosol, peroxisome, plasma membrane | 56.92 | 62.2 |
| Bra031610.1-P | Field mustard | golgi, peroxisome, plasma membrane | 65.02 | 62.19 |
| CDY22703 | Canola | golgi, peroxisome, plasma membrane | 61.66 | 62.15 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 54.55 | 61.88 |
| Bra018656.1-P | Field mustard | golgi, peroxisome, plasma membrane | 59.49 | 61.81 |
| PGSC0003DMT400040689 | Potato | plasma membrane | 63.83 | 61.64 |
| CDX93591 | Canola | golgi, peroxisome, plasma membrane | 56.52 | 61.64 |
| AT5G60780.1 | Thale cress | peroxisome | 65.61 | 61.6 |
| CDX93592 | Canola | golgi, peroxisome, plasma membrane | 55.93 | 61.52 |
| Bra018655.1-P | Field mustard | golgi, peroxisome, plasma membrane | 60.47 | 61.08 |
| Bra037625.1-P | Field mustard | peroxisome | 65.22 | 61.0 |
| AT3G45060.1 | Thale cress | peroxisome | 65.22 | 60.89 |
| Bra038302.1-P | Field mustard | peroxisome | 64.62 | 60.78 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 64.03 | 60.45 |
| CDY69111 | Canola | peroxisome | 56.92 | 60.0 |
| Bra020230.1-P | Field mustard | peroxisome | 57.71 | 59.84 |
| CDY50324 | Canola | plasma membrane | 56.72 | 59.79 |
| AT1G08100.1 | Thale cress | cytosol, peroxisome, plasma membrane | 61.66 | 59.77 |
| Bra037626.1-P | Field mustard | peroxisome | 64.43 | 59.71 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 62.85 | 58.56 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 60.47 | 58.17 |
| CDY26984 | Canola | plasma membrane | 50.79 | 56.36 |
| CDY53125 | Canola | plastid | 19.76 | 54.35 |
| TraesCS3B01G285900.1 | Wheat | plasma membrane | 53.16 | 52.33 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 8.3 | 50.0 |
| CDX99169 | Canola | cytosol | 7.11 | 48.0 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 38.93 | 38.1 |
| AT4G14358.1 | Thale cress | cytosol | 6.52 | 37.93 |
| TraesCS7B01G328700.1 | Wheat | golgi, peroxisome, plasma membrane | 35.97 | 37.45 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G045700.1 | EnsemblPlantsGene:TraesCS6B01G045700 | Gene3D:1.20.1250.20 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom |
| InterPro:MFS_trans_sf | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | PFAM:PF07690 | SEG:seg | SUPFAM:SSF103473 |
| TIGR:cd06174 | TMHMM:TMhelix | MapMan:24.2.2.10 | MapMan:25.1.3.1 | : | : |
Description
No Description!
Coordinates
chr6B:-:27169125..27171393
Molecular Weight (calculated)
54287.7 Da
IEP (calculated)
8.705
GRAVY (calculated)
0.456
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIGSTGTTA ASTNFSLPVD SEHKAKSIKI FSFGNPHMRA FHLGWMSFFT CVVSTFAAAP LIPIIRDNLN LTKADICNAG VASVSGAIFS RLAMGAICDL
101: LGPRYGGAFL IMLSAPAVFC MSVIDSPAGY ITVRFLIGVS LATFVSCQYW ISTMFNSKII GTVGGLTAGW GDMGGGATQL IMPFVFDAIK ACGATRFTAW
201: RIAYFVPGMM LVVMGLLVLT LGQDLPDGNL RSLQKNGGMN KDKFSKVLRG AITNYRTWIF VFIYGYCMGV ELTSNNVIAG YYYDSFYLDL RKAGIIAACF
301: GLANIFARPM GGYLSDLGAR YFGMRARLWN IWILQTAGGV FCLCLGRAST LPTSIVCMVL YSICVEAACG AVYGVIPFVS RRSLGLVSGM TGAGGNVGGG
401: LTQLLFFTSS QYTTGKGLQY MGIMIIACTL PVVLVHFPQW GSMLVPPSAD ATEGEYYSSE WTEEEKGKGL HMAGLKFAEN SISERGRRNA ILAVPATPPN
501: STPQHV
101: LGPRYGGAFL IMLSAPAVFC MSVIDSPAGY ITVRFLIGVS LATFVSCQYW ISTMFNSKII GTVGGLTAGW GDMGGGATQL IMPFVFDAIK ACGATRFTAW
201: RIAYFVPGMM LVVMGLLVLT LGQDLPDGNL RSLQKNGGMN KDKFSKVLRG AITNYRTWIF VFIYGYCMGV ELTSNNVIAG YYYDSFYLDL RKAGIIAACF
301: GLANIFARPM GGYLSDLGAR YFGMRARLWN IWILQTAGGV FCLCLGRAST LPTSIVCMVL YSICVEAACG AVYGVIPFVS RRSLGLVSGM TGAGGNVGGG
401: LTQLLFFTSS QYTTGKGLQY MGIMIIACTL PVVLVHFPQW GSMLVPPSAD ATEGEYYSSE WTEEEKGKGL HMAGLKFAEN SISERGRRNA ILAVPATPPN
501: STPQHV
001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
Arabidopsis Description
NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.