Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034142.1-P | Field mustard | plasma membrane | 27.49 | 96.75 |
| Bra037625.1-P | Field mustard | peroxisome | 95.76 | 95.93 |
| Bra038302.1-P | Field mustard | peroxisome | 92.99 | 93.68 |
| AT5G60780.1 | Thale cress | peroxisome | 89.3 | 89.8 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 72.88 | 74.53 |
| KRH30604 | Soybean | peroxisome | 72.69 | 74.34 |
| KRH22855 | Soybean | peroxisome | 72.51 | 74.15 |
| KRH26509 | Soybean | peroxisome | 72.32 | 73.96 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 33.76 | 73.49 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 66.79 | 72.69 |
| AT5G60770.1 | Thale cress | plasma membrane | 69.56 | 71.54 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 69.19 | 71.43 |
| PGSC0003DMT400040689 | Potato | plasma membrane | 68.82 | 71.18 |
| Solyc11g069750.1.1 | Tomato | extracellular | 68.45 | 70.67 |
| HORVU6Hr1G005750.1 | Barley | cytosol, plastid | 13.1 | 70.3 |
| AT1G08090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 67.9 | 69.43 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 64.21 | 69.32 |
| GSMUA_Achr11P... | Banana | cytosol | 61.07 | 68.67 |
| TraesCS6D01G035700.1 | Wheat | plasma membrane | 63.84 | 68.24 |
| TraesCS6D01G035900.1 | Wheat | plasma membrane | 63.84 | 68.24 |
| TraesCS6A01G031100.1 | Wheat | plastid | 63.65 | 68.05 |
| TraesCS6B01G044200.1 | Wheat | plasma membrane | 63.65 | 68.05 |
| TraesCS6A01G030700.1 | Wheat | plastid | 63.65 | 68.05 |
| TraesCS6B01G044300.1 | Wheat | plasma membrane | 63.65 | 68.05 |
| TraesCS6A01G031000.1 | Wheat | plasma membrane | 63.47 | 67.85 |
| TraesCS6A01G030900.1 | Wheat | plasma membrane | 63.47 | 67.85 |
| TraesCS6A01G030800.1 | Wheat | plasma membrane | 63.47 | 67.85 |
| TraesCS6D01G035800.1 | Wheat | plasma membrane | 63.47 | 67.85 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 55.72 | 67.71 |
| TraesCS6B01G044100.1 | Wheat | plastid | 63.28 | 67.65 |
| HORVU6Hr1G005590.1 | Barley | plasma membrane | 63.28 | 67.65 |
| Zm00001d054060_P001 | Maize | plastid | 64.94 | 67.18 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 65.31 | 67.17 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 65.31 | 67.17 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 66.05 | 67.17 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 66.05 | 67.17 |
| Zm00001d054057_P001 | Maize | extracellular | 64.76 | 66.98 |
| TraesCS6B01G044000.1 | Wheat | plasma membrane | 62.55 | 66.6 |
| HORVU6Hr1G005780.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 56.64 | 66.59 |
| TraesCS6D01G035600.1 | Wheat | plasma membrane | 62.18 | 66.21 |
| TraesCS6A01G031200.1 | Wheat | plasma membrane | 62.18 | 66.21 |
| HORVU6Hr1G005570.1 | Barley | golgi, plasma membrane | 33.21 | 66.18 |
| TraesCS6D01G037200.1 | Wheat | golgi, plasma membrane, plastid | 61.99 | 66.14 |
| TraesCS6A01G032400.1 | Wheat | plastid | 61.99 | 66.14 |
| AT1G08100.1 | Thale cress | cytosol, peroxisome, plasma membrane | 63.47 | 65.9 |
| TraesCS6D01G038100.1 | Wheat | golgi, plasma membrane, vacuole | 61.81 | 65.82 |
| TraesCS6B01G046600.1 | Wheat | plasma membrane | 61.81 | 65.82 |
| TraesCS6D01G037300.1 | Wheat | golgi, plasma membrane, plastid | 61.62 | 65.75 |
| TraesCS6B01G045600.1 | Wheat | golgi, plasma membrane, vacuole | 61.62 | 65.75 |
| TraesCS6D01G037800.1 | Wheat | plasma membrane | 61.44 | 65.68 |
| TraesCS6D01G037900.1 | Wheat | plasma membrane | 61.62 | 65.62 |
| TraesCS6A01G032500.1 | Wheat | plastid | 61.44 | 65.55 |
| TraesCS6A01G033000.1 | Wheat | plasma membrane | 61.44 | 65.42 |
| HORVU6Hr1G005770.1 | Barley | plasma membrane | 61.25 | 65.23 |
| TraesCS6A01G032900.1 | Wheat | golgi, plasma membrane, vacuole | 61.25 | 65.23 |
| TraesCS6B01G045700.1 | Wheat | plastid | 60.89 | 65.22 |
| TraesCS6B01G046700.1 | Wheat | plasma membrane | 61.07 | 65.16 |
| TraesCS6D01G038200.1 | Wheat | plasma membrane | 60.89 | 64.96 |
| HORVU6Hr1G005930.1 | Barley | plasma membrane | 60.89 | 64.96 |
| HORVU6Hr1G005720.1 | Barley | extracellular | 45.39 | 64.91 |
| TraesCS6A01G032800.1 | Wheat | plasma membrane | 60.7 | 64.89 |
| TraesCS6D01G038000.1 | Wheat | plasma membrane | 60.7 | 64.89 |
| TraesCS6B01G046500.1 | Wheat | plasma membrane | 60.7 | 64.89 |
| TraesCS6A01G033200.1 | Wheat | plasma membrane | 60.7 | 64.76 |
| TraesCS6A01G033100.1 | Wheat | plasma membrane | 60.52 | 64.57 |
| TraesCS6D01G038300.1 | Wheat | plasma membrane | 60.52 | 64.57 |
| Zm00001d014976_P001 | Maize | plasma membrane | 61.62 | 63.98 |
| EES04350 | Sorghum | plastid | 63.1 | 63.93 |
| HORVU6Hr1G005600.2 | Barley | endoplasmic reticulum | 59.96 | 63.85 |
| TraesCS2D01G073500.1 | Wheat | plasma membrane | 58.3 | 63.33 |
| TraesCS2A01G074800.1 | Wheat | plasma membrane | 58.49 | 63.15 |
| HORVU6Hr1G005580.1 | Barley | plastid | 63.47 | 63.12 |
| TraesCS6B01G044500.1 | Wheat | plastid | 55.72 | 62.27 |
| TraesCS6B01G044400.1 | Wheat | plastid | 64.39 | 61.77 |
| AT1G12940.1 | Thale cress | plasma membrane | 51.66 | 55.78 |
| AT5G14570.1 | Thale cress | plastid | 41.33 | 45.44 |
| AT4G14358.1 | Thale cress | cytosol | 6.64 | 41.38 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.10 | MapMan:25.1.3.1 | EntrezGene:823641 | UniProt:A0A178V6D4 | ProteinID:AEE77987.1 |
| ArrayExpress:AT3G45060 | EnsemblPlantsGene:AT3G45060 | RefSeq:AT3G45060 | TAIR:AT3G45060 | RefSeq:AT3G45060-TAIR-G | EnsemblPlants:AT3G45060.1 |
| TAIR:AT3G45060.1 | Symbol:ATNRT2.6 | Unigene:At.48735 | EMBL:BT011687 | EMBL:BT015382 | ProteinID:CAB89321.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009705 | GO:GO:0009987 | GO:GO:0015112 | GO:GO:0015706 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0042128 | GO:GO:0055085 | GO:GO:0071249 | GO:GO:0080167 |
| InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom | InterPro:MFS_trans_sf | RefSeq:NP_190092.1 | ProteinID:OAP01799.1 |
| PFAM:PF07690 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009031 | PO:PO:0009046 |
| PFscan:PS50850 | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | UniProt:Q9LXH0 | SUPFAM:SSF103473 | TMHMM:TMhelix |
| UniParc:UPI00000487CF | SEG:seg | : | : | : | : |
Description
NRT2.6High affinity nitrate transporter 2.6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXH0]
Coordinates
chr3:-:16477561..16479559
Molecular Weight (calculated)
58640.4 Da
IEP (calculated)
8.715
GRAVY (calculated)
0.385
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHNHSNEDG SIGTSLHGVT AREQVFSFSV QEDVPSSQAV RTNDPTAKFA LPVDSEHRAK VFKPLSFAKP HMRAFHLGWI SFFTCFISTF AAAPLVPVIR
101: DNLDLTKTDI GNAGVASVSG AIFSRLAMGA VCDLLGARYG TAFSLMLTAP AVFSMSFVAD AGSYLAVRFM IGFCLATFVS CQYWTSVMFT GKIIGLVNGC
201: AGGWGDMGGG VTQLLMPMVF HVIKLTGATP FTAWRFAFFI PGILQIVMGI LVLTLGQDLP DGNLSTLQKS GQVSKDKFSK VFWFAVKNYR TWILFMLYGF
301: SMGVELTINN VISGYFYDRF NLTLHTAGII AASFGMANFF ARPFGGYASD VAARLFGMRG RLWILWILQT VGALFCIWLG RASSLPIAIL AMMLFSMGTQ
401: AACGALFGVA PFVSRRSLGL ISGLTGAGGN FGSGVTQLLF FSSSRFSTAE GLSLMGVMAV VCSLPVAFIH FPQWGSMFLR PSQDGEKSKE EHYYGAEWTE
501: EEKSLGLHEG SIKFAENSRS ERGRKAMLAD IPTPETGSPA HV
101: DNLDLTKTDI GNAGVASVSG AIFSRLAMGA VCDLLGARYG TAFSLMLTAP AVFSMSFVAD AGSYLAVRFM IGFCLATFVS CQYWTSVMFT GKIIGLVNGC
201: AGGWGDMGGG VTQLLMPMVF HVIKLTGATP FTAWRFAFFI PGILQIVMGI LVLTLGQDLP DGNLSTLQKS GQVSKDKFSK VFWFAVKNYR TWILFMLYGF
301: SMGVELTINN VISGYFYDRF NLTLHTAGII AASFGMANFF ARPFGGYASD VAARLFGMRG RLWILWILQT VGALFCIWLG RASSLPIAIL AMMLFSMGTQ
401: AACGALFGVA PFVSRRSLGL ISGLTGAGGN FGSGVTQLLF FSSSRFSTAE GLSLMGVMAV VCSLPVAFIH FPQWGSMFLR PSQDGEKSKE EHYYGAEWTE
501: EEKSLGLHEG SIKFAENSRS ERGRKAMLAD IPTPETGSPA HV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.