Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G035900.1 | Wheat | plasma membrane | 98.82 | 98.82 |
| TraesCS6A01G030800.1 | Wheat | plasma membrane | 98.22 | 98.22 |
| TraesCS6A01G030900.1 | Wheat | plasma membrane | 98.03 | 98.03 |
| TraesCS6A01G031000.1 | Wheat | plasma membrane | 98.03 | 98.03 |
| TraesCS6A01G031100.1 | Wheat | plastid | 98.03 | 98.03 |
| TraesCS6A01G031200.1 | Wheat | plasma membrane | 92.7 | 92.34 |
| TraesCS6B01G044500.1 | Wheat | plastid | 87.18 | 91.13 |
| TraesCS6A01G033200.1 | Wheat | plasma membrane | 82.45 | 82.28 |
| TraesCS6A01G032900.1 | Wheat | golgi, plasma membrane, vacuole | 82.45 | 82.12 |
| TraesCS6A01G032800.1 | Wheat | plasma membrane | 82.05 | 82.05 |
| TraesCS6A01G033100.1 | Wheat | plasma membrane | 81.85 | 81.69 |
| Zm00001d054060_P001 | Maize | plastid | 84.22 | 81.49 |
| TraesCS6A01G033000.1 | Wheat | plasma membrane | 81.66 | 81.34 |
| Zm00001d054057_P001 | Maize | extracellular | 84.02 | 81.3 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 84.22 | 81.02 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 84.22 | 81.02 |
| TraesCS6A01G032400.1 | Wheat | plastid | 81.07 | 80.91 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 84.62 | 80.49 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 84.62 | 80.49 |
| TraesCS6A01G032500.1 | Wheat | plastid | 80.47 | 80.31 |
| TraesCS2A01G074800.1 | Wheat | plasma membrane | 75.54 | 76.29 |
| Zm00001d014976_P001 | Maize | plasma membrane | 77.91 | 75.67 |
| EES04350 | Sorghum | plastid | 78.3 | 74.21 |
| KRH22855 | Soybean | peroxisome | 77.12 | 73.77 |
| KRH26509 | Soybean | peroxisome | 76.92 | 73.58 |
| KRH30604 | Soybean | peroxisome | 76.53 | 73.21 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 71.99 | 72.71 |
| PGSC0003DMT400050658 | Potato | plasma membrane | 61.74 | 72.12 |
| GSMUA_Achr11P... | Banana | cytosol | 68.05 | 71.58 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 74.36 | 71.13 |
| CDY06298 | Canola | golgi, peroxisome, plasma membrane | 58.97 | 71.02 |
| VIT_08s0040g01500.t01 | Wine grape | golgi, peroxisome, plasma membrane, plastid | 74.36 | 71.0 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 34.32 | 69.88 |
| CDY32821 | Canola | cytosol, peroxisome, plasma membrane | 63.51 | 69.4 |
| CDX93591 | Canola | golgi, peroxisome, plasma membrane | 63.51 | 69.4 |
| PGSC0003DMT400092589 | Potato | plasma membrane | 72.98 | 69.29 |
| CDY22704 | Canola | cytosol, peroxisome, plasma membrane | 63.12 | 69.11 |
| Bra030713.1-P | Field mustard | golgi, peroxisome, plasma membrane | 72.19 | 69.06 |
| CDX93592 | Canola | golgi, peroxisome, plasma membrane | 62.52 | 68.91 |
| AT1G08090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 71.99 | 68.87 |
| PGSC0003DMT400002924 | Potato | plasma membrane | 71.99 | 68.87 |
| Bra031610.1-P | Field mustard | golgi, peroxisome, plasma membrane | 71.79 | 68.81 |
| Bra018656.1-P | Field mustard | golgi, peroxisome, plasma membrane | 66.08 | 68.79 |
| PGSC0003DMT400031306 | Potato | plasma membrane | 47.73 | 68.56 |
| CDY70994 | Canola | golgi, plasma membrane | 47.73 | 68.56 |
| AT5G60770.1 | Thale cress | plasma membrane | 71.01 | 68.31 |
| CDY72274 | Canola | plasma membrane | 47.53 | 68.27 |
| Bra018655.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.46 | 68.26 |
| Bra034142.1-P | Field mustard | plasma membrane | 20.71 | 68.18 |
| CDY22703 | Canola | golgi, peroxisome, plasma membrane | 67.46 | 68.13 |
| PGSC0003DMT400031304 | Potato | plasma membrane | 71.2 | 68.11 |
| Bra031611.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.85 | 67.98 |
| CDY06299 | Canola | golgi, peroxisome, plasma membrane | 67.85 | 67.98 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 66.67 | 67.87 |
| Bra002453.1-P | Field mustard | golgi, peroxisome, plasma membrane, plastid | 70.41 | 67.74 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 59.57 | 67.71 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 70.02 | 67.62 |
| CDY68730 | Canola | endoplasmic reticulum, plasma membrane | 52.27 | 67.43 |
| Solyc11g069750.1.1 | Tomato | extracellular | 69.63 | 67.24 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 24.26 | 67.21 |
| AT1G08100.1 | Thale cress | cytosol, peroxisome, plasma membrane | 68.05 | 66.09 |
| AT5G60780.1 | Thale cress | peroxisome | 68.44 | 64.38 |
| PGSC0003DMT400040689 | Potato | plasma membrane | 66.47 | 64.31 |
| Bra038302.1-P | Field mustard | peroxisome | 67.85 | 63.94 |
| AT3G45060.1 | Thale cress | peroxisome | 68.05 | 63.65 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.26 | 63.62 |
| Bra037625.1-P | Field mustard | peroxisome | 67.65 | 63.4 |
| CDY69111 | Canola | peroxisome | 59.76 | 63.12 |
| CDY50324 | Canola | plasma membrane | 59.76 | 63.12 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 65.48 | 63.12 |
| Bra020230.1-P | Field mustard | peroxisome | 59.96 | 62.3 |
| Bra037626.1-P | Field mustard | peroxisome | 67.06 | 62.27 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 18.74 | 61.69 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 65.09 | 60.77 |
| CDY26984 | Canola | plasma membrane | 54.24 | 60.31 |
| CDY53125 | Canola | plastid | 20.12 | 55.43 |
| TraesCS3A01G254000.1 | Wheat | plasma membrane | 55.62 | 54.86 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 8.48 | 51.19 |
| CDX99169 | Canola | cytosol | 7.1 | 48.0 |
| AT4G14358.1 | Thale cress | cytosol | 7.1 | 41.38 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 40.43 | 39.65 |
| TraesCS7A01G428500.1 | Wheat | golgi, peroxisome, plasma membrane | 33.53 | 36.32 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G030700.1 | EnsemblPlantsGene:TraesCS6A01G030700 | Gene3D:1.20.1250.20 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom |
| InterPro:MFS_trans_sf | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | PFAM:PF07690 | SEG:seg | SUPFAM:SSF103473 |
| TIGR:cd06174 | TMHMM:TMhelix | MapMan:24.2.2.10 | MapMan:25.1.3.1 | : | : |
Description
No Description!
Coordinates
chr6A:+:15727844..15729367
Molecular Weight (calculated)
54720.6 Da
IEP (calculated)
8.159
GRAVY (calculated)
0.386
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVEASSHGD APASKFSLPV DSEHKAKSFR LFSFANPHMR TFHLSWISFF TCFVSTFAAA PLVPIIRDNL NLAKADIGNA GVASVSGSIF SRLAMGAICD
101: LLGPRYGCAF LVMLSAPTVF CMAVIDDASG YIAVRFLIGF SLATFVSCQY WMSTMFNSKI IGTVNGLAAG WGNMGGGATQ LIMPLVFHAI QKCGATPFVA
201: WRIAYFVPGM MHIVMGLLVL TMGQDLPDGN LASLQKKGDM AKDKFSKVLW GAVTNYRTWI FVLLYGYCMG VELTTDNVIA EYYYDHFHLD LRAAGTIAAC
301: FGMANIVARP MGGYLSDLGA RYFGMRARLW NIWILQTAGG AFCIWLGRAS ALPASVTAMV LFSICAQAAC GAVFGVAPFV SRRSLGIISG LTGAGGNVGA
401: GLTQLLFFTS SQYSTGRGLE YMGIMIMACT LPVALVHFPQ WGSMFFPASA DATEEEYYAS EWSEEEKSKG LHIAGQKFAE NSRSERGRRN VILAASATPP
501: NNTPQHL
101: LLGPRYGCAF LVMLSAPTVF CMAVIDDASG YIAVRFLIGF SLATFVSCQY WMSTMFNSKI IGTVNGLAAG WGNMGGGATQ LIMPLVFHAI QKCGATPFVA
201: WRIAYFVPGM MHIVMGLLVL TMGQDLPDGN LASLQKKGDM AKDKFSKVLW GAVTNYRTWI FVLLYGYCMG VELTTDNVIA EYYYDHFHLD LRAAGTIAAC
301: FGMANIVARP MGGYLSDLGA RYFGMRARLW NIWILQTAGG AFCIWLGRAS ALPASVTAMV LFSICAQAAC GAVFGVAPFV SRRSLGIISG LTGAGGNVGA
401: GLTQLLFFTS SQYSTGRGLE YMGIMIMACT LPVALVHFPQ WGSMFFPASA DATEEEYYAS EWSEEEKSKG LHIAGQKFAE NSRSERGRRN VILAASATPP
501: NNTPQHL
001: MTHNHSNEEG SIGTSLHGVT AREQVFSFSV DASSQTVQSD DPTAKFALPV DSEHRAKVFN PLSFAKPHMR AFHLGWLSFF TCFISTFAAA PLVPIIRDNL
101: DLTKTDIGNA GVASVSGAIF SRLAMGAVCD LLGARYGTAF SLMLTAPTVF SMSFVGGPSG YLGVRFMIGF CLATFVSCQY WTSVMFNGKI IGLVNGCAGG
201: WGDMGGGVTQ LLMPMVFHVI KLAGATPFMA WRIAFFVPGF LQVVMGILVL SLGQDLPDGN LSTLQKSGQV SKDKFSKVFW FAVKNYRTWI LFVLYGSSMG
301: IELTINNVIS GYFYDRFNLK LQTAGIVAAS FGMANFIARP FGGYASDVAA RVFGMRGRLW TLWIFQTVGA LFCIWLGRAS SLPIAILAMM LFSIGTQAAC
401: GALFGVAPFV SRRSLGLISG LTGAGGNFGS GLTQLLFFSS ARFSTAEGLS LMGVMAVLCT LPVAFIHFPQ WGSMFLRPST DGERSQEEYY YGSEWTENEK
501: QQGLHEGSIK FAENSRSERG RKVALANIPT PENGTPSHV
101: DLTKTDIGNA GVASVSGAIF SRLAMGAVCD LLGARYGTAF SLMLTAPTVF SMSFVGGPSG YLGVRFMIGF CLATFVSCQY WTSVMFNGKI IGLVNGCAGG
201: WGDMGGGVTQ LLMPMVFHVI KLAGATPFMA WRIAFFVPGF LQVVMGILVL SLGQDLPDGN LSTLQKSGQV SKDKFSKVFW FAVKNYRTWI LFVLYGSSMG
301: IELTINNVIS GYFYDRFNLK LQTAGIVAAS FGMANFIARP FGGYASDVAA RVFGMRGRLW TLWIFQTVGA LFCIWLGRAS SLPIAILAMM LFSIGTQAAC
401: GALFGVAPFV SRRSLGLISG LTGAGGNFGS GLTQLLFFSS ARFSTAEGLS LMGVMAVLCT LPVAFIHFPQ WGSMFLRPST DGERSQEEYY YGSEWTENEK
501: QQGLHEGSIK FAENSRSERG RKVALANIPT PENGTPSHV
Arabidopsis Description
NRT2.3High affinity nitrate transporter 2.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH7]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.