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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • golgi 1
  • plasma membrane 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:golgi, mitochondrion, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:golgi
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
EES07094
KXG26563

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G08090.1 EES07094 AT5G50200.1 17012411
AT1G08090.1 KXG26563 AT5G50200.1 17012411
AT5G60780.1 EES07094 AT5G50200.1 17012411
AT5G60780.1 KXG26563 AT5G50200.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d014976_P001 Maize plasma membrane 88.97 91.19
HORVU6Hr1G005750.1 Barley cytosol, plastid 15.33 81.19
TraesCS6A01G030900.1 Wheat plasma membrane 74.58 78.7
TraesCS6A01G030700.1 Wheat plastid 74.21 78.3
TraesCS6B01G044300.1 Wheat plasma membrane 74.21 78.3
TraesCS6D01G035900.1 Wheat plasma membrane 74.21 78.3
TraesCS6A01G030800.1 Wheat plasma membrane 74.02 78.11
TraesCS6A01G031000.1 Wheat plasma membrane 74.02 78.11
TraesCS6B01G044200.1 Wheat plasma membrane 73.83 77.91
TraesCS6D01G035700.1 Wheat plasma membrane 73.83 77.91
HORVU6Hr1G005590.1 Barley plasma membrane 73.64 77.71
TraesCS6B01G044100.1 Wheat plastid 73.64 77.71
TraesCS6D01G035800.1 Wheat plasma membrane 73.64 77.71
EES06135 Sorghum golgi, peroxisome, plasma membrane 76.45 77.61
TraesCS6A01G031100.1 Wheat plastid 73.46 77.51
HORVU6Hr1G005780.1 Barley endoplasmic reticulum, plasma membrane, vacuole 66.73 77.44
EES04351 Sorghum golgi, peroxisome, plasma membrane 76.26 77.42
TraesCS6D01G035600.1 Wheat plasma membrane 73.64 77.41
TraesCS6A01G031200.1 Wheat plasma membrane 73.46 77.21
HORVU6Hr1G005570.1 Barley golgi, plasma membrane 39.25 77.21
TraesCS6B01G044000.1 Wheat plasma membrane 73.08 76.82
TraesCS6A01G032800.1 Wheat plasma membrane 72.71 76.73
TraesCS6B01G046500.1 Wheat plasma membrane 72.71 76.73
TraesCS6D01G037800.1 Wheat plasma membrane 72.71 76.73
TraesCS6A01G033000.1 Wheat plasma membrane 71.96 75.64
HORVU6Hr1G005930.1 Barley plasma membrane 71.78 75.59
TraesCS6A01G032400.1 Wheat plastid 71.78 75.59
TraesCS6D01G037200.1 Wheat golgi, plasma membrane, plastid 71.4 75.2
TraesCS6D01G037300.1 Wheat golgi, plasma membrane, plastid 71.4 75.2
TraesCS6D01G038200.1 Wheat plasma membrane 71.4 75.2
TraesCS6B01G046600.1 Wheat plasma membrane 71.4 75.05
TraesCS6D01G037900.1 Wheat plasma membrane 71.4 75.05
TraesCS6A01G033100.1 Wheat plasma membrane 71.22 75.0
TraesCS6B01G045600.1 Wheat golgi, plasma membrane, vacuole 71.22 75.0
TraesCS6D01G038300.1 Wheat plasma membrane 71.22 75.0
TraesCS6A01G032900.1 Wheat golgi, plasma membrane, vacuole 71.22 74.85
TraesCS6A01G032500.1 Wheat plastid 71.03 74.8
TraesCS6A01G033200.1 Wheat plasma membrane 71.03 74.8
HORVU6Hr1G005770.1 Barley plasma membrane 71.03 74.66
TraesCS6B01G046700.1 Wheat plasma membrane 70.84 74.61
TraesCS6B01G045700.1 Wheat plastid 70.09 74.11
HORVU6Hr1G005600.2 Barley endoplasmic reticulum 70.47 74.07
TraesCS6D01G038100.1 Wheat golgi, plasma membrane, vacuole 70.09 73.67
HORVU6Hr1G005720.1 Barley extracellular 51.96 73.35
TraesCS6D01G038000.1 Wheat plasma membrane 69.35 73.18
HORVU6Hr1G005580.1 Barley plastid 73.83 72.48
TraesCS6B01G044500.1 Wheat plastid 64.86 71.55
TraesCS6B01G044400.1 Wheat plastid 74.77 70.8
TraesCS2D01G073500.1 Wheat plasma membrane 65.61 70.34
TraesCS2A01G074800.1 Wheat plasma membrane 65.79 70.12
KRH26509 Soybean peroxisome 68.97 69.62
KRH30604 Soybean peroxisome 68.97 69.62
KRH22855 Soybean peroxisome 68.78 69.43
GSMUA_Achr8P14230_001 Banana golgi, peroxisome, plasma membrane 64.86 69.12
GSMUA_Achr11P... Banana cytosol 61.87 68.67
VIT_06s0061g00320.t01 Wine grape peroxisome 67.85 68.49
VIT_08s0040g01500.t01 Wine grape golgi, peroxisome, plasma membrane, plastid 66.73 67.23
PGSC0003DMT400050658 Potato plasma membrane 54.02 66.59
AT5G60770.1 Thale cress plasma membrane 65.42 66.41
CDY06298 Canola golgi, peroxisome, plasma membrane 52.15 66.27
CDY32821 Canola cytosol, peroxisome, plasma membrane 57.2 65.95
Bra030713.1-P Field mustard golgi, peroxisome, plasma membrane 64.86 65.47
Bra002453.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 64.49 65.46
AT1G08090.1 Thale cress cytosol, peroxisome, plasma membrane 64.67 65.28
CDX93592 Canola golgi, peroxisome, plasma membrane 56.07 65.22
PGSC0003DMT400092589 Potato plasma membrane 65.05 65.17
Bra018656.1-P Field mustard golgi, peroxisome, plasma membrane 59.25 65.09
CDX93591 Canola golgi, peroxisome, plasma membrane 56.45 65.09
CDY22704 Canola cytosol, peroxisome, plasma membrane 56.26 65.01
PGSC0003DMT400002924 Potato plasma membrane 64.3 64.91
PGSC0003DMT400031304 Potato plasma membrane 64.11 64.72
VIT_06s0061g00310.t01 Wine grape plasma membrane 30.09 64.66
Bra031610.1-P Field mustard golgi, peroxisome, plasma membrane 63.93 64.65
Solyc11g069760.1.1 Tomato extracellular, plasma membrane 22.06 64.48
Bra018655.1-P Field mustard golgi, peroxisome, plasma membrane 60.37 64.47
CDY22703 Canola golgi, peroxisome, plasma membrane 60.37 64.34
Solyc06g010250.2.1 Tomato plasma membrane 59.81 64.26
CDY68730 Canola endoplasmic reticulum, plasma membrane 47.1 64.12
Solyc11g069750.1.1 Tomato extracellular 62.8 64.0
Bra031611.1-P Field mustard golgi, peroxisome, plasma membrane 60.37 63.83
CDY06299 Canola golgi, peroxisome, plasma membrane 60.37 63.83
PGSC0003DMT400050654 Potato plasma membrane 62.62 63.81
KRH25078 Soybean peroxisome, plasma membrane, plastid, vacuole 52.9 63.45
CDY69111 Canola peroxisome 56.64 63.12
AT3G45060.1 Thale cress peroxisome 63.93 63.1
Bra037625.1-P Field mustard peroxisome 63.74 63.03
Bra034142.1-P Field mustard plasma membrane 18.13 62.99
CDY50324 Canola plasma membrane 56.45 62.92
AT5G60780.1 Thale cress peroxisome 63.36 62.89
CDY72274 Canola plasma membrane 41.5 62.89
PGSC0003DMT400031306 Potato plasma membrane 41.5 62.89
Bra038302.1-P Field mustard peroxisome 63.18 62.83
AT1G08100.1 Thale cress cytosol, peroxisome, plasma membrane 61.12 62.64
Bra002451.1-P Field mustard golgi, peroxisome, plasma membrane 62.62 62.5
PGSC0003DMT400040689 Potato plasma membrane 61.12 62.4
CDY70994 Canola golgi, plasma membrane 41.12 62.32
Bra020230.1-P Field mustard peroxisome 56.45 61.89
Bra037626.1-P Field mustard peroxisome 62.06 60.81
Bra038301.1-P Field mustard golgi, peroxisome, plasma membrane 61.5 60.59
Solyc06g074990.1.1 Tomato plasma membrane 58.5 59.51
CDY26984 Canola plasma membrane 48.97 57.46
CDY31024 Canola endoplasmic reticulum, plasma membrane 16.45 57.14
CDY53125 Canola plastid 19.07 55.43
EES01339 Sorghum plasma membrane 51.78 53.79
CDY31023 Canola endoplasmic reticulum, extracellular 8.41 53.57
CDX99169 Canola cytosol 6.92 49.33
AT4G14358.1 Thale cress cytosol 6.92 42.53
OQU87011 Sorghum plasma membrane 36.82 40.7
Solyc11g069740.1.1 Tomato cytosol, peroxisome 37.76 39.07
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.10MapMan:25.1.3.1EntrezGene:8085190UniProt:C5XS78EnsemblPlants:EES04350
ProteinID:EES04350ProteinID:EES04350.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005886GO:GO:0006810GO:GO:0008150
GO:GO:0009705GO:GO:0009987GO:GO:0015112GO:GO:0015706GO:GO:0016020GO:GO:0016021
GO:GO:0055085GO:GO:0071249InterPro:IPR020846InterPro:MFSInterPro:MFS_domInterPro:MFS_trans_sf
PFAM:PF07690PANTHER:PTHR23515PANTHER:PTHR23515:SF3EnsemblPlantsGene:SORBI_3004G009200SUPFAM:SSF103473TMHMM:TMhelix
UniParc:UPI0001A85208RefSeq:XP_002451374.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr4:+:788283..790240
Molecular Weight (calculated)
57253.3 Da
IEP (calculated)
7.594
GRAVY (calculated)
0.402
Length
535 amino acids
Sequence
(BLAST)
001: MASEAPAGSS LHGVTAREPS FPFAFSTEET PAAAAGKSFD LPVDSEHKAK SIRLLSFANP HMRTFHLSWM SFFTCVVSTF AAAPLIPIIR ENLGLTKADI
101: GNAGVASVSG AIFSRLAMGA VCDLLGPRYG CAFVVMLAAP AVFCMAIIDS AAGYVVCRFL IGFSLATFVS CQYWTSTMFN IKIIGTVNAL ASGWGDMGGG
201: ATQLIMPFVY EGILRCGATP FAAWRIAYFV PGLMHIAVGI LVLTAGQDLP DGNLRTLQKQ GGDSCRRDNF SRVLWHAVAN YRTWVFVFVY GYCMGVQLTT
301: NNIIAEFFYD QFDLDIRVAG IIAASFGMAN LVSRPLGGVL SDVGARYWGM RARLWNIWIL QTAGGAFCLW LGRASWLPAS VTAMVLFSLC AQAACGATFG
401: VIPFVSRRSL GVISGLTGAG GNVGAGLTQL LFFTTSSYST GKGIENMGIM TMACTLPLVL VHFPQWGSML LPPSADADEE SYYAAEWSEE EKSVGRHSTS
501: LKFAENCRSE RGRRNSAVAV LAAAATPPDN TPEHV
Best Arabidopsis Sequence Match ( AT5G60770.1 )
(BLAST)
001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
Arabidopsis Description
NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.