Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g112090.2.1 | |
| Solyc03g112100.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60780.1 | Solyc03g112090.2.1 | AT5G50200.1 | 17012411 |
| AT5G60780.1 | Solyc03g112100.2.1 | AT5G50200.1 | 17012411 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040689 | Potato | plasma membrane | 97.39 | 92.56 |
| Solyc11g069750.1.1 | Tomato | extracellular | 82.53 | 78.29 |
| Bra034142.1-P | Field mustard | plasma membrane | 23.09 | 74.68 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 34.74 | 69.48 |
| HORVU6Hr1G005750.1 | Barley | cytosol, plastid | 14.06 | 69.31 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 73.49 | 69.06 |
| KRH26509 | Soybean | peroxisome | 72.89 | 68.49 |
| KRH30604 | Soybean | peroxisome | 72.89 | 68.49 |
| KRH22855 | Soybean | peroxisome | 72.89 | 68.49 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 72.09 | 66.98 |
| TraesCS6A01G030900.1 | Wheat | plasma membrane | 68.07 | 66.86 |
| HORVU6Hr1G005590.1 | Barley | plasma membrane | 68.07 | 66.86 |
| AT5G60780.1 | Thale cress | peroxisome | 72.29 | 66.79 |
| AT3G45060.1 | Thale cress | peroxisome | 72.69 | 66.79 |
| TraesCS6A01G030800.1 | Wheat | plasma membrane | 67.87 | 66.67 |
| TraesCS6A01G030700.1 | Wheat | plastid | 67.87 | 66.67 |
| TraesCS6A01G031000.1 | Wheat | plasma membrane | 67.87 | 66.67 |
| TraesCS6D01G035700.1 | Wheat | plasma membrane | 67.87 | 66.67 |
| TraesCS6D01G035900.1 | Wheat | plasma membrane | 67.87 | 66.67 |
| TraesCS6B01G044200.1 | Wheat | plasma membrane | 67.87 | 66.67 |
| TraesCS6B01G044100.1 | Wheat | plastid | 67.87 | 66.67 |
| Bra020230.1-P | Field mustard | peroxisome | 65.26 | 66.6 |
| TraesCS6B01G044300.1 | Wheat | plasma membrane | 67.67 | 66.47 |
| TraesCS6A01G031100.1 | Wheat | plastid | 67.67 | 66.47 |
| TraesCS6D01G035800.1 | Wheat | plasma membrane | 67.67 | 66.47 |
| CDY50324 | Canola | plasma membrane | 64.06 | 66.46 |
| CDY69111 | Canola | peroxisome | 63.86 | 66.25 |
| Bra037625.1-P | Field mustard | peroxisome | 71.89 | 66.17 |
| Bra038302.1-P | Field mustard | peroxisome | 71.49 | 66.17 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 24.3 | 66.12 |
| TraesCS6B01G044000.1 | Wheat | plasma membrane | 67.27 | 65.82 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 58.43 | 65.25 |
| TraesCS6D01G035600.1 | Wheat | plasma membrane | 66.67 | 65.23 |
| TraesCS6A01G031200.1 | Wheat | plasma membrane | 66.47 | 65.03 |
| HORVU6Hr1G005570.1 | Barley | golgi, plasma membrane | 35.34 | 64.71 |
| HORVU6Hr1G005780.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 59.84 | 64.64 |
| TraesCS6B01G045600.1 | Wheat | golgi, plasma membrane, vacuole | 65.66 | 64.37 |
| TraesCS6D01G037200.1 | Wheat | golgi, plasma membrane, plastid | 65.66 | 64.37 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 64.86 | 64.34 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 19.88 | 64.29 |
| TraesCS6D01G037800.1 | Wheat | plasma membrane | 65.26 | 64.1 |
| Bra037626.1-P | Field mustard | peroxisome | 70.28 | 64.1 |
| TraesCS6A01G032500.1 | Wheat | plastid | 65.26 | 63.98 |
| TraesCS6A01G032400.1 | Wheat | plastid | 65.26 | 63.98 |
| TraesCS6B01G046700.1 | Wheat | plasma membrane | 65.26 | 63.98 |
| TraesCS6B01G046500.1 | Wheat | plasma membrane | 65.06 | 63.91 |
| HORVU6Hr1G005720.1 | Barley | extracellular | 48.59 | 63.85 |
| TraesCS6D01G037300.1 | Wheat | golgi, plasma membrane, plastid | 65.06 | 63.78 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 67.47 | 63.76 |
| TraesCS6B01G045700.1 | Wheat | plastid | 64.66 | 63.64 |
| TraesCS6A01G033100.1 | Wheat | plasma membrane | 64.86 | 63.58 |
| TraesCS6D01G038300.1 | Wheat | plasma membrane | 64.86 | 63.58 |
| TraesCS6D01G038200.1 | Wheat | plasma membrane | 64.86 | 63.58 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 67.27 | 63.57 |
| TraesCS6A01G032800.1 | Wheat | plasma membrane | 64.66 | 63.51 |
| TraesCS6B01G046600.1 | Wheat | plasma membrane | 64.86 | 63.46 |
| HORVU6Hr1G005930.1 | Barley | plasma membrane | 64.66 | 63.39 |
| TraesCS6A01G033000.1 | Wheat | plasma membrane | 64.66 | 63.26 |
| HORVU6Hr1G005600.2 | Barley | endoplasmic reticulum | 64.66 | 63.26 |
| TraesCS6A01G033200.1 | Wheat | plasma membrane | 64.46 | 63.19 |
| Zm00001d054060_P001 | Maize | plastid | 66.47 | 63.17 |
| TraesCS6D01G037900.1 | Wheat | plasma membrane | 64.46 | 63.06 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 68.67 | 62.98 |
| Zm00001d054057_P001 | Maize | extracellular | 66.27 | 62.98 |
| GSMUA_Achr11P... | Banana | cytosol | 60.64 | 62.66 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 66.87 | 62.48 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 66.87 | 62.48 |
| HORVU6Hr1G005770.1 | Barley | plasma membrane | 63.86 | 62.48 |
| TraesCS6D01G038100.1 | Wheat | golgi, plasma membrane, vacuole | 63.86 | 62.48 |
| TraesCS6A01G032900.1 | Wheat | golgi, plasma membrane, vacuole | 63.86 | 62.48 |
| Zm00001d014976_P001 | Maize | plasma membrane | 65.46 | 62.45 |
| HORVU6Hr1G005580.1 | Barley | plastid | 68.27 | 62.39 |
| TraesCS6D01G038000.1 | Wheat | plasma membrane | 62.85 | 61.74 |
| TraesCS2A01G074800.1 | Wheat | plasma membrane | 61.65 | 61.16 |
| TraesCS2D01G073500.1 | Wheat | plasma membrane | 61.24 | 61.12 |
| TraesCS6B01G044500.1 | Wheat | plastid | 59.44 | 61.03 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 63.86 | 60.46 |
| TraesCS6B01G044400.1 | Wheat | plastid | 68.47 | 60.35 |
| EES04350 | Sorghum | plastid | 64.26 | 59.81 |
| CDY53125 | Canola | plastid | 21.08 | 57.07 |
| Solyc02g067790.2.1 | Tomato | golgi, peroxisome, plasma membrane | 43.37 | 46.96 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 7.83 | 46.43 |
| CDX99169 | Canola | cytosol | 6.02 | 40.0 |
| AT4G14358.1 | Thale cress | cytosol | 6.63 | 37.93 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 38.55 | 37.14 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.10 | MapMan:25.1.3.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009705 | GO:GO:0009987 | GO:GO:0015112 | GO:GO:0015706 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | GO:GO:0071249 | InterPro:IPR020846 | UniProt:K4C451 | InterPro:MFS |
| InterPro:MFS_dom | InterPro:MFS_trans_sf | PFAM:PF07690 | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | SUPFAM:SSF103473 |
| EnsemblPlantsGene:Solyc06g010250.2 | EnsemblPlants:Solyc06g010250.2.1 | TMHMM:TMhelix | UniParc:UPI0002767264 | SEG:seg | : |
Description
No Description!
Coordinates
chr6:-:5518796..5521038
Molecular Weight (calculated)
54469.6 Da
IEP (calculated)
9.124
GRAVY (calculated)
0.468
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MANAEGRFKF SLPVDSEHKA KTLKIFSFAQ PHMRSFHLAW ISFFTCLIST FAAAPLVPII RDNLDLTRSD IGNAGVASVS GSIFSRLVMG VVCDLIGPRY
101: GCAFVNLLTA PVVFSVAFVS TPQGYIAVRF MIGVSLATFV SCQYWTSTMF NGQIIGLVNG VAAGWGDMGG GVTQLLMPFL FHIIQLTGAT PFTAWRIAFF
201: IPGWLHIIVG VMVLVLGQDL PDGNLSDLQK SGDVHKDKFS KVVWFAVTNY RTWVFFLVYG YSMGVQLCMN NVIAEYFFDK FNLKLHTAGV IAGAYGMVNF
301: VARPFGGYAS DLAARKFGMR GRLWILWIVQ TLGGVFCVWL GRAETLPIAI LAMILFSIGA QAACGATYGV IPFVSRRSLG LISGLTGAGG NFGGGLTQLI
401: FFSSTTFSTS MGLTWMGFMA VACSVPIALI HFPQWGSMFL PASKDENYNE EKYYSSEWSY DEKQKGLHNA SIKFAENSVS ERGRKHIIIY SATTPPHV
101: GCAFVNLLTA PVVFSVAFVS TPQGYIAVRF MIGVSLATFV SCQYWTSTMF NGQIIGLVNG VAAGWGDMGG GVTQLLMPFL FHIIQLTGAT PFTAWRIAFF
201: IPGWLHIIVG VMVLVLGQDL PDGNLSDLQK SGDVHKDKFS KVVWFAVTNY RTWVFFLVYG YSMGVQLCMN NVIAEYFFDK FNLKLHTAGV IAGAYGMVNF
301: VARPFGGYAS DLAARKFGMR GRLWILWIVQ TLGGVFCVWL GRAETLPIAI LAMILFSIGA QAACGATYGV IPFVSRRSLG LISGLTGAGG NFGGGLTQLI
401: FFSSTTFSTS MGLTWMGFMA VACSVPIALI HFPQWGSMFL PASKDENYNE EKYYSSEWSY DEKQKGLHNA SIKFAENSVS ERGRKHIIIY SATTPPHV
001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
Arabidopsis Description
NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.