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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:
  • plastid 1
  • golgi 1
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, peroxisome, plasma membrane
Any Predictor:golgi, mitochondrion, peroxisome, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:golgi
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000613.1-P
Bra022511.1-P
Bra033790.1-P
Bra037934.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G60780.1 Bra000613.1-P AT5G50200.1 17012411
AT5G60780.1 Bra022511.1-P AT5G50200.1 17012411
AT5G60780.1 Bra033790.1-P AT5G50200.1 17012411
AT5G60780.1 Bra037934.1-P AT5G50200.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50324 Canola plasma membrane 88.62 98.96
Bra020230.1-P Field mustard peroxisome 83.96 92.21
AT5G60780.1 Thale cress peroxisome 92.16 91.65
Bra034142.1-P Field mustard plasma membrane 25.56 88.96
Bra037625.1-P Field mustard peroxisome 87.87 87.06
Bra038302.1-P Field mustard peroxisome 86.01 85.69
Bra038301.1-P Field mustard golgi, peroxisome, plasma membrane 80.41 79.37
Bra037626.1-P Field mustard peroxisome 80.6 79.12
KRH22855 Soybean peroxisome 73.13 73.96
KRH30604 Soybean peroxisome 72.95 73.77
KRH26509 Soybean peroxisome 72.57 73.4
VIT_06s0061g00320.t01 Wine grape peroxisome 71.83 72.64
HORVU6Hr1G005750.1 Barley cytosol, plastid 13.62 72.28
Solyc06g010250.2.1 Tomato plasma membrane 66.98 72.09
VIT_06s0061g00310.t01 Wine grape plasma membrane 33.02 71.08
PGSC0003DMT400040689 Potato plasma membrane 69.4 70.99
PGSC0003DMT400050654 Potato plasma membrane 68.66 70.1
Bra002453.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 68.66 69.83
Solyc11g069750.1.1 Tomato extracellular 68.1 69.52
Bra030713.1-P Field mustard golgi, peroxisome, plasma membrane 67.91 68.68
Bra031610.1-P Field mustard golgi, peroxisome, plasma membrane 67.54 68.43
KRH25078 Soybean peroxisome, plasma membrane, plastid, vacuole 56.9 68.39
Bra031611.1-P Field mustard golgi, peroxisome, plasma membrane 64.55 68.38
Bra018656.1-P Field mustard golgi, peroxisome, plasma membrane 61.94 68.17
Bra018655.1-P Field mustard golgi, peroxisome, plasma membrane 63.43 67.86
GSMUA_Achr8P14230_001 Banana golgi, peroxisome, plasma membrane 63.43 67.73
TraesCS6D01G035700.1 Wheat plasma membrane 63.99 67.65
TraesCS6B01G044300.1 Wheat plasma membrane 63.81 67.46
HORVU6Hr1G005590.1 Barley plasma membrane 63.81 67.46
TraesCS6A01G031100.1 Wheat plastid 63.81 67.46
TraesCS6D01G035900.1 Wheat plasma membrane 63.81 67.46
TraesCS6A01G030900.1 Wheat plasma membrane 63.62 67.26
TraesCS6A01G030700.1 Wheat plastid 63.62 67.26
TraesCS6A01G031000.1 Wheat plasma membrane 63.62 67.26
TraesCS6D01G035800.1 Wheat plasma membrane 63.62 67.26
TraesCS6B01G044200.1 Wheat plasma membrane 63.62 67.26
TraesCS6A01G030800.1 Wheat plasma membrane 63.43 67.06
TraesCS6B01G044100.1 Wheat plastid 63.43 67.06
GSMUA_Achr11P... Banana cytosol 59.7 66.39
Zm00001d054060_P001 Maize plastid 64.74 66.22
Zm00001d054057_P001 Maize extracellular 64.55 66.03
EES06135 Sorghum golgi, peroxisome, plasma membrane 64.74 65.84
EES04351 Sorghum golgi, peroxisome, plasma membrane 64.74 65.84
TraesCS6B01G044000.1 Wheat plasma membrane 62.5 65.82
TraesCS6D01G035600.1 Wheat plasma membrane 62.5 65.82
Os02t0112600-01 Rice golgi, plasma membrane, plastid 65.3 65.67
Os02t0112100-01 Rice golgi, plasma membrane, plastid 65.3 65.67
TraesCS6A01G031200.1 Wheat plasma membrane 62.31 65.62
HORVU6Hr1G005780.1 Barley endoplasmic reticulum, plasma membrane, vacuole 55.97 65.08
TraesCS6D01G037200.1 Wheat golgi, plasma membrane, plastid 61.38 64.76
TraesCS6D01G037900.1 Wheat plasma membrane 61.38 64.64
TraesCS6A01G032400.1 Wheat plastid 61.19 64.57
TraesCS6A01G032500.1 Wheat plastid 61.19 64.57
TraesCS6D01G037300.1 Wheat golgi, plasma membrane, plastid 61.01 64.37
TraesCS6B01G045600.1 Wheat golgi, plasma membrane, vacuole 61.01 64.37
TraesCS6D01G037800.1 Wheat plasma membrane 60.82 64.3
TraesCS6B01G046600.1 Wheat plasma membrane 61.01 64.24
TraesCS6A01G033000.1 Wheat plasma membrane 60.82 64.05
TraesCS6B01G045700.1 Wheat plastid 60.45 64.03
TraesCS6A01G032900.1 Wheat golgi, plasma membrane, vacuole 60.63 63.85
TraesCS6D01G038100.1 Wheat golgi, plasma membrane, vacuole 60.63 63.85
HORVU6Hr1G005770.1 Barley plasma membrane 60.45 63.65
HORVU6Hr1G005570.1 Barley golgi, plasma membrane 32.28 63.6
TraesCS6A01G033200.1 Wheat plasma membrane 60.26 63.58
TraesCS6B01G046500.1 Wheat plasma membrane 60.07 63.51
TraesCS6A01G032800.1 Wheat plasma membrane 60.07 63.51
TraesCS6D01G038300.1 Wheat plasma membrane 60.07 63.39
TraesCS6D01G038200.1 Wheat plasma membrane 60.07 63.39
TraesCS6B01G046700.1 Wheat plasma membrane 60.07 63.39
HORVU6Hr1G005930.1 Barley plasma membrane 60.07 63.39
TraesCS6D01G038000.1 Wheat plasma membrane 59.89 63.31
HORVU6Hr1G005600.2 Barley endoplasmic reticulum 60.07 63.26
Zm00001d014976_P001 Maize plasma membrane 61.57 63.22
TraesCS6A01G033100.1 Wheat plasma membrane 59.89 63.19
HORVU6Hr1G005580.1 Barley plastid 64.18 63.12
EES04350 Sorghum plastid 62.5 62.62
HORVU6Hr1G005720.1 Barley extracellular 44.22 62.53
TraesCS2A01G074800.1 Wheat plasma membrane 57.28 61.16
TraesCS6B01G044500.1 Wheat plastid 55.22 61.03
TraesCS2D01G073500.1 Wheat plasma membrane 56.72 60.92
TraesCS6B01G044400.1 Wheat plastid 64.18 60.88
Bra023475.1-P Field mustard plastid 38.81 42.98
Bra016747.1-P Field mustard plasma membrane 43.84 40.87
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.10MapMan:25.1.3.1EnsemblPlantsGene:Bra002451EnsemblPlants:Bra002451.1EnsemblPlants:Bra002451.1-P
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0055085
InterPro:IPR020846UniProt:M4CE20InterPro:MFSInterPro:MFS_domInterPro:MFS_trans_sfPFAM:PF07690
PFscan:PS50850PANTHER:PTHR23515PANTHER:PTHR23515:SF3SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI00025442BA
SEG:seg:::::
Description
AT5G60780 (E=3e-270) ATNRT2.3, NRT2.3 | ATNRT2.3; nitrate transmembrane transporter
Coordinates
chrA10:+:9510040..9511991
Molecular Weight (calculated)
58216.9 Da
IEP (calculated)
9.196
GRAVY (calculated)
0.404
Length
536 amino acids
Sequence
(BLAST)
001: MASNEEGSIG TSLHGVTAKE HVFSFSADAS SQVVPSNDPT SKFALPVDSE HRAKVFNPLS FAKPHMRAFH LGWISFFTCF ISTFAAAPLV PIIRDNLDLT
101: KTDIGNAGVA SVSGAIFSRL AMGAVCDLLG ARYGTAFSLM LTAPMVFTMS FVTGPVGYLA VRFMIGFCLA TFVSCQYWTS VMFNGKIIGL VNGCAGGWGD
201: MGGGVTQLLM PMVFHVIKLA GATPFMAWRI AFFVPGFLQV VMGILVLTFG QDLPDGNLST LQKSGQVSKD KFSKVFWFAV KNYRTWILFV LYGFSMGIEL
301: TINNVISGYF FDRFNLKLQT AGIVAASFGM ANFFARPFGG YASDVAAKLF GMRGRLWILW IFQTVGALFC IWLGRANSLP IAVLAMILFS IGTQAACGAL
401: FGVAPFVSRR SLGLISGLTG AGGNFGSGLT QLLFFSTSRF STAEGLSLMG AMAVLCTLPV AFIHFPQWGS MFLRPSRDGE RSKEEYYYSS EWTEDEKRQG
501: LHEGSIKFAE NSRSERSRKV ALADFPTQET GNQTIV
Best Arabidopsis Sequence Match ( AT5G60780.1 )
(BLAST)
001: MTHNHSNEEG SIGTSLHGVT AREQVFSFSV DASSQTVQSD DPTAKFALPV DSEHRAKVFN PLSFAKPHMR AFHLGWLSFF TCFISTFAAA PLVPIIRDNL
101: DLTKTDIGNA GVASVSGAIF SRLAMGAVCD LLGARYGTAF SLMLTAPTVF SMSFVGGPSG YLGVRFMIGF CLATFVSCQY WTSVMFNGKI IGLVNGCAGG
201: WGDMGGGVTQ LLMPMVFHVI KLAGATPFMA WRIAFFVPGF LQVVMGILVL SLGQDLPDGN LSTLQKSGQV SKDKFSKVFW FAVKNYRTWI LFVLYGSSMG
301: IELTINNVIS GYFYDRFNLK LQTAGIVAAS FGMANFIARP FGGYASDVAA RVFGMRGRLW TLWIFQTVGA LFCIWLGRAS SLPIAILAMM LFSIGTQAAC
401: GALFGVAPFV SRRSLGLISG LTGAGGNFGS GLTQLLFFSS ARFSTAEGLS LMGVMAVLCT LPVAFIHFPQ WGSMFLRPST DGERSQEEYY YGSEWTENEK
501: QQGLHEGSIK FAENSRSERG RKVALANIPT PENGTPSHV
Arabidopsis Description
NRT2.3High affinity nitrate transporter 2.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH7]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.