Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002451.1-P | |
| Bra018656.1-P | |
| Bra020230.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50200.1 | Bra018656.1-P | AT1G08090.1 | 17012411 |
| AT5G50200.1 | Bra002451.1-P | AT5G60780.1 | 17012411 |
| AT5G50200.1 | Bra020230.1-P | AT5G60780.1 | 17012411 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16372 | Canola | extracellular | 100.0 | 100.0 |
| Bra037934.1-P | Field mustard | endoplasmic reticulum, extracellular | 87.26 | 88.94 |
| Bra000613.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 83.96 | 86.41 |
| Bra033790.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 75.94 | 78.16 |
| AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 74.53 | 75.24 |
| Bra013828.1-P | Field mustard | cytosol | 45.28 | 62.34 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 49.06 | 51.74 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 47.17 | 50.51 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 48.58 | 49.52 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 46.7 | 49.5 |
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 48.11 | 49.04 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 45.28 | 47.06 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 42.92 | 44.83 |
| Zm00001d017095_P001 | Maize | extracellular | 39.62 | 41.38 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 40.09 | 40.28 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 37.26 | 39.9 |
| Os02t0595900-01 | Rice | plasma membrane | 38.68 | 39.81 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 36.79 | 39.39 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 36.79 | 39.39 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 36.79 | 39.39 |
| TraesCS6D01G193100.1 | Wheat | extracellular | 36.79 | 39.39 |
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 36.32 | 38.89 |
| TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 36.32 | 38.69 |
| Os04t0480200-01 | Rice | plasma membrane | 36.79 | 37.14 |
| Zm00001d003287_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 33.02 | 35.53 |
| KXG26563 | Sorghum | extracellular, plasma membrane, vacuole | 32.55 | 31.8 |
| TraesCS4A01G367300.1 | Wheat | plastid | 36.79 | 30.59 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 35.85 | 30.28 |
| Solyc03g112090.2.1 | Tomato | extracellular | 16.04 | 29.57 |
| HORVU5Hr1G115500.4 | Barley | mitochondrion, plastid | 36.32 | 29.39 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 41.98 | 26.89 |
Protein Annotations
| EnsemblPlants:Bra022511.1 | EnsemblPlants:Bra022511.1-P | EnsemblPlantsGene:Bra022511 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0010167 | GO:GO:0015706 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 |
| PANTHER:PTHR34806:SF1 | PFAM:PF16974 | PIRSF:PIRSF012939 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0002545590 | UniProt:M4E163 | MapMan:25.1.3.2 | : | : | : |
Description
AT5G50200 (E=6e-073) WR3 | WR3 (WOUND-RESPONSIVE 3); nitrate transmembrane transporter
Coordinates
chrA02:-:9340030..9341118
Molecular Weight (calculated)
23617.3 Da
IEP (calculated)
9.538
GRAVY (calculated)
-0.196
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIKKLLFAS LLICSMIQSS HGATKERLFT DLEKGALEIT ATPSRTGEGV VLAAGIDKLS ITWKVSSTAT KEPEFKTIKV KLCYAPISQV DRPWRKTENE
101: LFKDKSCPHK ISSFSYDPTV KTAQSFDYTL ERDIPTGTYY VRAYAVDAKD HEVAFGQSTN QDKTTNLFSV QAISGRHKSL DIASVCFSVF SVVALLVFFV
201: NEKRKAKIEQ SK
101: LFKDKSCPHK ISSFSYDPTV KTAQSFDYTL ERDIPTGTYY VRAYAVDAKD HEVAFGQSTN QDKTTNLFSV QAISGRHKSL DIASVCFSVF SVVALLVFFV
201: NEKRKAKIEQ SK
001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
Arabidopsis Description
NRT3.1High-affinity nitrate transporter 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGS5]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.