Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002451.1-P | |
| Bra018656.1-P | |
| Bra020230.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50200.1 | Bra018656.1-P | AT1G08090.1 | 17012411 |
| AT5G50200.1 | Bra002451.1-P | AT5G60780.1 | 17012411 |
| AT5G50200.1 | Bra020230.1-P | AT5G60780.1 | 17012411 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 99.51 | 99.51 |
| CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 97.09 | 97.09 |
| Bra033790.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 86.89 | 86.89 |
| Bra037934.1-P | Field mustard | endoplasmic reticulum, extracellular | 85.44 | 84.62 |
| Bra022511.1-P | Field mustard | extracellular | 86.41 | 83.96 |
| AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 78.16 | 76.67 |
| Bra013828.1-P | Field mustard | cytosol | 46.6 | 62.34 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 50.97 | 53.03 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 51.46 | 52.74 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 51.46 | 50.96 |
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 51.46 | 50.96 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 49.03 | 50.5 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 46.6 | 47.06 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 45.15 | 45.81 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 41.26 | 42.93 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 43.69 | 42.65 |
| Zm00001d017095_P001 | Maize | extracellular | 41.75 | 42.36 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 40.29 | 41.92 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 40.29 | 41.92 |
| TraesCS6D01G193100.1 | Wheat | extracellular | 40.29 | 41.92 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 40.29 | 41.92 |
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 39.32 | 40.91 |
| Os02t0595900-01 | Rice | plasma membrane | 40.29 | 40.29 |
| TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 38.84 | 40.2 |
| Os04t0480200-01 | Rice | plasma membrane | 39.32 | 38.57 |
| Zm00001d003287_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 35.44 | 37.06 |
| KXG26563 | Sorghum | extracellular, plasma membrane, vacuole | 34.47 | 32.72 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 39.32 | 32.27 |
| TraesCS4A01G367300.1 | Wheat | plastid | 39.32 | 31.76 |
| Solyc03g112090.2.1 | Tomato | extracellular | 16.99 | 30.43 |
| HORVU5Hr1G115500.4 | Barley | mitochondrion, plastid | 38.35 | 30.15 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 44.66 | 27.79 |
Protein Annotations
| EnsemblPlants:Bra000613.1 | EnsemblPlants:Bra000613.1-P | EnsemblPlantsGene:Bra000613 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0010167 | GO:GO:0015706 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 |
| PANTHER:PTHR34806:SF1 | PFAM:PF16974 | PIRSF:PIRSF012939 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI00025401F7 | UniProt:M4C8T5 | MapMan:25.1.3.2 | : | : | : |
Description
AT5G50200 (E=2e-074) WR3 | WR3 (WOUND-RESPONSIVE 3); nitrate transmembrane transporter
Coordinates
chrA03:+:12056381..12057317
Molecular Weight (calculated)
23103.7 Da
IEP (calculated)
9.389
GRAVY (calculated)
-0.181
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIHKSLFAS LLICLLFQIS HGATKERLFS DLEKGALEVT AKPSREGVLD AGIDKLSITW KLSSTATKEA EFTTIKVKLC YAPVSQVDRP WRKTENELFK
101: DKSCPHKIIT RAYDKSPQSF EYTLERDIPT GTYFVRAYAV DAKDHEVAFG QSTNEAKSTN LFSVQAISGR HKSLDIASVC FSVFSVLALL VFFVNEKRKA
201: KIEQSK
101: DKSCPHKIIT RAYDKSPQSF EYTLERDIPT GTYFVRAYAV DAKDHEVAFG QSTNEAKSTN LFSVQAISGR HKSLDIASVC FSVFSVLALL VFFVNEKRKA
201: KIEQSK
001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
Arabidopsis Description
NRT3.1High-affinity nitrate transporter 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGS5]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.