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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400040689
PGSC0003DMT400050654

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G50200.1 PGSC0003DMT400040689 AT5G60780.1 17012411
AT5G50200.1 PGSC0003DMT400050654 AT5G60780.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g112100.2.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 45.62 74.38
VIT_17s0000g09470.t01 Wine grape endoplasmic reticulum, vacuole 33.84 55.72
KRH57152 Soybean endoplasmic reticulum, extracellular 34.44 54.81
GSMUA_Achr6P12130_001 Banana endoplasmic reticulum, extracellular 32.63 54.0
KRH03862 Soybean endoplasmic reticulum, extracellular 33.84 53.85
GSMUA_Achr9P01940_001 Banana endoplasmic reticulum 31.42 52.53
Bra013828.1-P Field mustard cytosol 21.45 46.1
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane 28.4 46.08
AT5G50200.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 29.0 45.71
CDX83019 Canola endoplasmic reticulum, extracellular, plasma membrane 28.1 45.15
TraesCS6B01G238800.1 Wheat endoplasmic reticulum, extracellular, vacuole 26.89 44.95
Bra000613.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 27.79 44.66
Bra033790.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 27.79 44.66
CDY34047 Canola endoplasmic reticulum, extracellular, plasma membrane 27.79 44.66
CDY64637 Canola endoplasmic reticulum, extracellular, plasma membrane 27.79 44.66
TraesCS6D01G193200.2 Wheat plasma membrane 26.59 44.44
TraesCS5D01G506100.1 Wheat endoplasmic reticulum, extracellular, vacuole 26.59 44.22
TraesCS6D01G193100.1 Wheat extracellular 26.28 43.94
TraesCS6B01G238700.1 Wheat extracellular 26.28 43.94
HORVU6Hr1G053710.1 Barley extracellular 26.28 43.94
Os02t0595900-01 Rice plasma membrane 27.19 43.69
TraesCS6A01G209900.1 Wheat extracellular 25.98 43.43
CDY03424 Canola endoplasmic reticulum, extracellular, plasma membrane 26.89 42.79
CDY16372 Canola extracellular 26.89 41.98
Bra022511.1-P Field mustard extracellular 26.89 41.98
Zm00001d017095_P001 Maize extracellular 25.38 41.38
Zm00001d003287_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 24.47 41.12
CDX71613 Canola endoplasmic reticulum, extracellular 26.28 41.04
CDX91545 Canola endoplasmic reticulum, extracellular, plasma membrane 26.28 41.04
Bra037934.1-P Field mustard endoplasmic reticulum, extracellular 25.68 40.87
EES07094 Sorghum endoplasmic reticulum, extracellular, plasma membrane 25.68 40.28
Os04t0480200-01 Rice plasma membrane 25.38 40.0
CDY05799 Canola cytosol, endoplasmic reticulum, plastid 13.6 39.82
KXG26563 Sorghum extracellular, plasma membrane, vacuole 25.38 38.71
AT4G24715.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 26.59 38.1
TraesCS6A01G210000.1 Wheat endoplasmic reticulum 26.28 34.66
TraesCS4A01G367300.1 Wheat plastid 26.59 34.51
HORVU5Hr1G115500.4 Barley mitochondrion, plastid 26.89 33.97
CDY34305 Canola extracellular, plasma membrane, plastid 26.59 33.59
Protein Annotations
EnsemblPlants:PGSC0003DMT400046695EnsemblPlantsGene:PGSC0003DMG400018129EntrezGene:102587134GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0010167GO:GO:0015706GO:GO:0016020GO:GO:0016021InterPro:Transptr_NO3_Nar2PANTHER:PTHR34806
PANTHER:PTHR34806:SF1PFAM:PF16974PGSC:PGSC0003DMG400018129SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0002959A01
UniProt:M1BJG7MapMan:25.1.3.2::::
Description
High-affinity nitrate transport system component [Source:PGSC_GENE;Acc:PGSC0003DMG400018129]
Coordinates
chr3:-:51866265..51873338
Molecular Weight (calculated)
37097.4 Da
IEP (calculated)
9.811
GRAVY (calculated)
-0.257
Length
331 amino acids
Sequence
(BLAST)
001: MAISTRAIFV ATIVICSFLA VCDGEILFST LKKALEVKAD HKAGVLMAGE DILTFKWSLN TTLSAGADSG YKSVKLQLCY APISQKDRAW RKTEDHLKKD
101: KTCQFKIVTV PYKSSNNNYT WTIKRDIPTA TYFVRAYVLN ANGEEIGYGQ NTDDKKQTLL INSSPSQGQV LQAGEAQVTI TWSLNNSYPT GTDTNYKTVN
201: VKLCYAPVSQ LDRGWRKSNN NLKKDKTCQI NLVTMPYKPS NNNFTWTIHK DVPTATYFIR AYVYDSTGEV VAYGQTTDAH KKTNLFKITA ITGRHITIDV
301: CAACFSVFSI ISLVGFYFVE KRKAVKISQR K
Best Arabidopsis Sequence Match ( AT5G50200.1 )
(BLAST)
001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
Arabidopsis Description
NRT3.1High-affinity nitrate transporter 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGS5]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.