Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50200.1 | CDX93592 | AT1G08090.1 | 17012411 |
| AT5G50200.1 | CDY50324 | AT5G60780.1 | 17012411 |
| AT5G50200.1 | CDY69111 | AT5G60780.1 | 17012411 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033790.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 97.57 | 97.57 |
| CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 87.38 | 87.38 |
| CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 85.44 | 85.44 |
| CDX71613 | Canola | endoplasmic reticulum, extracellular | 80.1 | 77.83 |
| CDY16372 | Canola | extracellular | 79.61 | 77.36 |
| CDY05799 | Canola | cytosol, endoplasmic reticulum, plastid | 42.23 | 76.99 |
| CDX91545 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 78.64 | 76.42 |
| AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 72.82 | 71.43 |
| CDY03424 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 59.71 | 59.13 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 50.0 | 52.02 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 49.03 | 50.25 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 48.54 | 50.0 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 49.03 | 48.56 |
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 49.03 | 48.56 |
| CDY34305 | Canola | extracellular, plasma membrane, plastid | 59.71 | 46.95 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 46.12 | 46.57 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 44.17 | 44.83 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 40.29 | 41.92 |
| Zm00001d017095_P001 | Maize | extracellular | 41.26 | 41.87 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 39.81 | 41.41 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 39.81 | 41.41 |
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 39.81 | 41.41 |
| TraesCS6D01G193100.1 | Wheat | extracellular | 39.81 | 41.41 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 39.81 | 41.41 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 41.75 | 40.76 |
| Os02t0595900-01 | Rice | plasma membrane | 39.81 | 39.81 |
| TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 38.35 | 39.7 |
| Os04t0480200-01 | Rice | plasma membrane | 37.86 | 37.14 |
| Zm00001d003287_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 34.95 | 36.55 |
| Solyc03g112090.2.1 | Tomato | extracellular | 19.9 | 35.65 |
| KXG26563 | Sorghum | extracellular, plasma membrane, vacuole | 34.47 | 32.72 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 39.32 | 32.27 |
| TraesCS4A01G367300.1 | Wheat | plastid | 38.84 | 31.37 |
| HORVU5Hr1G115500.4 | Barley | mitochondrion, plastid | 37.86 | 29.77 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 45.15 | 28.1 |
Protein Annotations
| EnsemblPlants:CDX83019 | EnsemblPlantsGene:GSBRNA2T00138481001 | GO:A0A078D449 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010167 |
| GO:GO:0015706 | InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 | PANTHER:PTHR34806:SF1 | PFAM:PF16974 | PIRSF:PIRSF012939 |
| ProteinID:CDX83019 | ProteinID:CDX83019.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EED907 |
| MapMan:25.1.3.2 | : | : | : | : | : |
Description
BnaA01g20190D
Coordinates
chrLK031831:-:545253..547089
Molecular Weight (calculated)
23349.2 Da
IEP (calculated)
10.285
GRAVY (calculated)
-0.238
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIHKIILAS FIVYLMIQFS HGATKERLFS DLEKDALDVT AKPSRQGVLD AGIDKLSITW KLSSTAKKQA NFTTIKVKLC YAPVSQVDRP WRKTENELFK
101: DKTCPHKIIT RAYNKSSQSF KYTLDRDIPT GTYFVRTYAV DAKDHEVAFG QSTNEAKTTN LFSVQAISGR HKSLDIASVC FSVFSVLALL VFFVNEKRKA
201: KLEQRK
101: DKTCPHKIIT RAYNKSSQSF KYTLDRDIPT GTYFVRTYAV DAKDHEVAFG QSTNEAKTTN LFSVQAISGR HKSLDIASVC FSVFSVLALL VFFVNEKRKA
201: KLEQRK
001: MRHMCDTHLV VLPYQDHILI RIMAIHTLLF VSLLIFSLIE SSSGGKKDRL FTDLQNSIEV TAKPVKDSGV LEAGKDMVTI TWKLKSSSAK VDTDTAFKTI
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
Arabidopsis Description
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.