Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 3
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 75.3 | 95.45 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 74.5 | 94.44 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 74.1 | 93.94 |
| TraesCS4A01G367300.1 | Wheat | plastid | 71.31 | 70.2 |
| Zm00001d017095_P001 | Maize | extracellular | 45.82 | 56.65 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 45.02 | 56.5 |
| Os02t0595900-01 | Rice | plasma membrane | 45.82 | 55.83 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 46.61 | 55.45 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 42.23 | 53.54 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 40.64 | 50.0 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 39.84 | 49.75 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 37.85 | 45.67 |
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 37.85 | 45.67 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 33.47 | 41.38 |
| CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.67 | 39.81 |
| CDX83019 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.27 | 39.32 |
| Bra000613.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 32.27 | 39.32 |
| Bra033790.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 32.27 | 39.32 |
| CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.27 | 39.32 |
| AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 32.67 | 39.05 |
| Bra013828.1-P | Field mustard | cytosol | 23.11 | 37.66 |
| CDX91545 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 31.47 | 37.26 |
| CDY16372 | Canola | extracellular | 30.28 | 35.85 |
| Bra022511.1-P | Field mustard | extracellular | 30.28 | 35.85 |
| CDX71613 | Canola | endoplasmic reticulum, extracellular | 29.88 | 35.38 |
| Bra037934.1-P | Field mustard | endoplasmic reticulum, extracellular | 29.08 | 35.1 |
| CDY03424 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 29.08 | 35.1 |
| CDY05799 | Canola | cytosol, endoplasmic reticulum, plastid | 15.14 | 33.63 |
| AT4G24715.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 29.08 | 31.6 |
| CDY34305 | Canola | extracellular, plasma membrane, plastid | 31.08 | 29.77 |
| Solyc03g112090.2.1 | Tomato | extracellular | 12.75 | 27.83 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 34.66 | 26.28 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G210000.1 | EnsemblPlantsGene:TraesCS6A01G210000 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010167 | GO:GO:0015706 |
| InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 | PFAM:PF16974 | PIRSF:PIRSF012939 | SEG:seg | TMHMM:TMhelix |
| MapMan:25.1.3.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:381025658..381028549
Molecular Weight (calculated)
26989.3 Da
IEP (calculated)
8.756
GRAVY (calculated)
-0.001
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPSSHLPP WLRHRAQVGD YGIEGITSEA NHWPCPEPSS CELQPKFQAR IAAMARSELV MALLVVVLAG GCCASAGAVA YLSKLPVILD VTASPSPGQV
101: LHAGEDVITV TWALNASQPA GKDADYKNVK VSLCYAPVSQ KEREWRKTHD DLKKDKTCQF KVTQQAYPGT GKVEYRVALD IPTATYYVRA YALDASGTQV
201: AYGQTAPAAA FNIVSITGVT TSIKVAAGVF SAFSVASLAF FFFIEKRKKN N
101: LHAGEDVITV TWALNASQPA GKDADYKNVK VSLCYAPVSQ KEREWRKTHD DLKKDKTCQF KVTQQAYPGT GKVEYRVALD IPTATYYVRA YALDASGTQV
201: AYGQTAPAAA FNIVSITGVT TSIKVAAGVF SAFSVASLAF FFFIEKRKKN N
001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
Arabidopsis Description
NRT3.1High-affinity nitrate transporter 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGS5]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.