Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03424 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 75.19 | 94.71 |
| Bra013828.1-P | Field mustard | cytosol | 54.58 | 92.86 |
| AT4G24715.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 53.82 | 61.04 |
| CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 47.71 | 60.68 |
| CDX83019 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 46.95 | 59.71 |
| CDY16372 | Canola | extracellular | 48.09 | 59.43 |
| CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 46.56 | 59.22 |
| CDX91545 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 47.71 | 58.96 |
| CDX71613 | Canola | endoplasmic reticulum, extracellular | 46.56 | 57.55 |
| CDY05799 | Canola | cytosol, endoplasmic reticulum, plastid | 24.81 | 57.52 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 38.17 | 49.75 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 37.02 | 46.63 |
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 37.02 | 46.63 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 35.11 | 46.46 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 33.97 | 44.5 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 33.21 | 42.86 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 32.82 | 42.16 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 31.3 | 38.86 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 29.01 | 38.38 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 29.01 | 38.38 |
| TraesCS6D01G193100.1 | Wheat | extracellular | 29.01 | 38.38 |
| TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 29.01 | 38.19 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 28.63 | 37.88 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 28.63 | 37.88 |
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 28.24 | 37.37 |
| Zm00001d017095_P001 | Maize | extracellular | 28.63 | 36.95 |
| Os02t0595900-01 | Rice | plasma membrane | 29.01 | 36.89 |
| Zm00001d003287_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 27.1 | 36.04 |
| Os04t0480200-01 | Rice | plasma membrane | 28.63 | 35.71 |
| Solyc03g112090.2.1 | Tomato | extracellular | 14.5 | 33.04 |
| KXG26563 | Sorghum | extracellular, plasma membrane, vacuole | 26.72 | 32.26 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 29.77 | 31.08 |
| TraesCS4A01G367300.1 | Wheat | plastid | 29.77 | 30.59 |
| HORVU5Hr1G115500.4 | Barley | mitochondrion, plastid | 29.77 | 29.77 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 33.59 | 26.59 |
Protein Annotations
| EnsemblPlants:CDY34305 | EnsemblPlantsGene:GSBRNA2T00056344001 | GO:A0A078H6V6 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0010167 | GO:GO:0015706 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 |
| PANTHER:PTHR34806:SF1 | PFAM:PF16974 | ProteinID:CDY34305 | ProteinID:CDY34305.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EEDC23 | UniProt:A0A078H6V6 | MapMan:25.1.3.2 | : | : | : |
Description
BnaA01g14080DBnaA01g14080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6V6]
Coordinates
chrLK032332:-:240849..243623
Molecular Weight (calculated)
29504.5 Da
IEP (calculated)
8.897
GRAVY (calculated)
-0.113
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNTFFSYCC CDCNIIRLHV YLCTLKKAHD HTITTVSSLR FKIPLLEKSD STMAVQTFLF ASLIFFSSSI ESNHGATEVS LFTNLENSLE VTAKPTRVGV
101: VVLEAGKDMV RITWMLKSSA KVNDDASFKT VEVKLCYAPI SQVDRPWRKT HNELSRDRSC PHKIVSKPYD KIPQSLNWTI DRETPTGTYF VRVYGIGVNG
201: QEVAYGQSSD AEKTTNLFSV EGISGRHTSL DIASICFSVF SFGTLLVFLV KEKRKANLQQ RK
101: VVLEAGKDMV RITWMLKSSA KVNDDASFKT VEVKLCYAPI SQVDRPWRKT HNELSRDRSC PHKIVSKPYD KIPQSLNWTI DRETPTGTYF VRVYGIGVNG
201: QEVAYGQSSD AEKTTNLFSV EGISGRHTSL DIASICFSVF SFGTLLVFLV KEKRKANLQQ RK
001: MRHMCDTHLV VLPYQDHILI RIMAIHTLLF VSLLIFSLIE SSSGGKKDRL FTDLQNSIEV TAKPVKDSGV LEAGKDMVTI TWKLKSSSAK VDTDTAFKTI
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
Arabidopsis Description
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.