Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 4
- extracellular 4
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013828.1-P | Field mustard | cytosol | 70.19 | 94.81 |
| CDY34305 | Canola | extracellular, plasma membrane, plastid | 94.71 | 75.19 |
| CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.06 | 61.65 |
| AT4G24715.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 68.27 | 61.47 |
| CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 59.62 | 60.19 |
| CDY16372 | Canola | extracellular | 61.06 | 59.91 |
| CDX83019 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 59.13 | 59.71 |
| CDX91545 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 60.58 | 59.43 |
| CDY05799 | Canola | cytosol, endoplasmic reticulum, plastid | 32.21 | 59.29 |
| CDX71613 | Canola | endoplasmic reticulum, extracellular | 59.13 | 58.02 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 49.52 | 51.24 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 48.08 | 48.08 |
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 48.08 | 48.08 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 44.71 | 46.97 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 43.27 | 45.0 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 42.31 | 43.35 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 42.31 | 43.14 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 39.42 | 38.86 |
| TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 37.02 | 38.69 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 36.54 | 38.38 |
| TraesCS6D01G193100.1 | Wheat | extracellular | 36.54 | 38.38 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 36.54 | 38.38 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 36.06 | 37.88 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 36.06 | 37.88 |
| Os02t0595900-01 | Rice | plasma membrane | 37.5 | 37.86 |
| Zm00001d017095_P001 | Maize | extracellular | 36.54 | 37.44 |
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 35.58 | 37.37 |
| Zm00001d003287_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 33.65 | 35.53 |
| Os04t0480200-01 | Rice | plasma membrane | 35.58 | 35.24 |
| KXG26563 | Sorghum | extracellular, plasma membrane, vacuole | 33.65 | 32.26 |
| Solyc03g112090.2.1 | Tomato | extracellular | 17.79 | 32.17 |
| TraesCS4A01G367300.1 | Wheat | plastid | 36.54 | 29.8 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 35.1 | 29.08 |
| HORVU5Hr1G115500.4 | Barley | mitochondrion, plastid | 36.54 | 29.01 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 42.79 | 26.89 |
Protein Annotations
| EnsemblPlants:CDY03424 | EnsemblPlantsGene:GSBRNA2T00116074001 | GO:A0A078ERW9 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010167 |
| GO:GO:0015706 | InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 | PANTHER:PTHR34806:SF1 | PFAM:PF16974 | PIRSF:PIRSF012939 |
| ProteinID:CDY03424 | ProteinID:CDY03424.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EF168F |
| MapMan:25.1.3.2 | : | : | : | : | : |
Description
BnaC01g16580D
Coordinates
chrLK031943:+:381895..383096
Molecular Weight (calculated)
23364.9 Da
IEP (calculated)
9.366
GRAVY (calculated)
-0.229
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQTFLFAS LIIFSSIESN HGATEVSLFT NLENSLEVTA KPTRVGVVWE AGKDIVRITW MLKSSAKVND DAAFKTVEVK LCYAPISQVD RPWRKTHNEL
101: SRDRSCPHKI VSKPYDKIPQ SLNWTIDRET PTGTYFIRAY GTDVNGYEVA YGQSSDAEKT TNLFSVEGIS GRHTSLDIAS ICFSVFSFGS LLVFLVKEKR
201: KAKLQQRK
101: SRDRSCPHKI VSKPYDKIPQ SLNWTIDRET PTGTYFIRAY GTDVNGYEVA YGQSSDAEKT TNLFSVEGIS GRHTSLDIAS ICFSVFSFGS LLVFLVKEKR
201: KAKLQQRK
001: MRHMCDTHLV VLPYQDHILI RIMAIHTLLF VSLLIFSLIE SSSGGKKDRL FTDLQNSIEV TAKPVKDSGV LEAGKDMVTI TWKLKSSSAK VDTDTAFKTI
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
Arabidopsis Description
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.