Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G193100.1 | Wheat | extracellular | 99.49 | 99.49 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 98.99 | 98.99 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 96.46 | 96.46 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 93.94 | 74.1 |
| TraesCS4A01G367300.1 | Wheat | plastid | 88.38 | 68.63 |
| Zm00001d017095_P001 | Maize | extracellular | 59.6 | 58.13 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 57.07 | 56.5 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 59.6 | 55.92 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 54.04 | 54.04 |
| Os02t0595900-01 | Rice | plasma membrane | 56.06 | 53.88 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 52.02 | 50.49 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 51.01 | 50.25 |
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 49.49 | 47.12 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 48.99 | 46.63 |
| CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.42 | 40.78 |
| AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 42.93 | 40.48 |
| Bra000613.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 41.92 | 40.29 |
| CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 41.92 | 40.29 |
| CDX83019 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 41.41 | 39.81 |
| Bra033790.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 41.41 | 39.81 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 40.4 | 39.41 |
| Bra013828.1-P | Field mustard | cytosol | 29.8 | 38.31 |
| CDX91545 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 40.4 | 37.74 |
| CDX71613 | Canola | endoplasmic reticulum, extracellular | 39.39 | 36.79 |
| Bra022511.1-P | Field mustard | extracellular | 39.39 | 36.79 |
| CDY16372 | Canola | extracellular | 39.39 | 36.79 |
| Bra037934.1-P | Field mustard | endoplasmic reticulum, extracellular | 38.38 | 36.54 |
| CDY03424 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 38.38 | 36.54 |
| CDY05799 | Canola | cytosol, endoplasmic reticulum, plastid | 19.7 | 34.51 |
| AT4G24715.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 37.88 | 32.47 |
| Solyc03g112090.2.1 | Tomato | extracellular | 17.17 | 29.57 |
| CDY34305 | Canola | extracellular, plasma membrane, plastid | 38.38 | 29.01 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 43.43 | 25.98 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G209900.1 | EnsemblPlantsGene:TraesCS6A01G209900 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010167 | GO:GO:0015706 |
| InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 | PFAM:PF16974 | PFscan:PS51257 | PIRSF:PIRSF012939 | SEG:seg |
| SignalP:SignalP-noTM | TMHMM:TMhelix | MapMan:25.1.3.2 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:380361234..380362127
Molecular Weight (calculated)
21113.3 Da
IEP (calculated)
9.304
GRAVY (calculated)
0.096
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MARQGMVTAL LLVVLAAGCC ASAGAVAYLS KLPVTLDVTA SPSPGQVLHA GEDVITVTWA LDASQPAGKD ADYKNVKVSL CYAPVSQKER EWRKTHDDLK
101: KDKTCQFKVT QQAYPGTGKV EYRVALDIPT ATYYVRAYAL DASGTQVAYG QTAPASAFNV VSITGVTTSI KVAAGVFSAF SVASLAFFFF IEKRKKNN
101: KDKTCQFKVT QQAYPGTGKV EYRVALDIPT ATYYVRAYAL DASGTQVAYG QTAPASAFNV VSITGVTTSI KVAAGVFSAF SVASLAFFFF IEKRKKNN
001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
Arabidopsis Description
NRT3.1High-affinity nitrate transporter 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGS5]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.