Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G030800.1 | Wheat | plasma membrane | 89.2 | 99.41 |
| HORVU6Hr1G005570.1 | Barley | golgi, plasma membrane | 47.79 | 99.26 |
| TraesCS6B01G044300.1 | Wheat | plasma membrane | 89.03 | 99.21 |
| TraesCS6B01G044100.1 | Wheat | plastid | 88.32 | 98.42 |
| TraesCS6B01G044200.1 | Wheat | plasma membrane | 87.61 | 97.63 |
| TraesCS6B01G044000.1 | Wheat | plasma membrane | 83.19 | 92.34 |
| TraesCS6B01G044500.1 | Wheat | plastid | 78.76 | 91.75 |
| TraesCS6B01G046500.1 | Wheat | plasma membrane | 73.98 | 82.45 |
| TraesCS6B01G046700.1 | Wheat | plasma membrane | 73.63 | 81.89 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 76.28 | 81.78 |
| TraesCS6B01G046600.1 | Wheat | plasma membrane | 73.63 | 81.73 |
| Zm00001d054060_P001 | Maize | plastid | 75.75 | 81.68 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 76.11 | 81.59 |
| Zm00001d054057_P001 | Maize | extracellular | 75.58 | 81.49 |
| TraesCS6B01G045700.1 | Wheat | plastid | 72.21 | 80.63 |
| TraesCS6B01G045600.1 | Wheat | golgi, plasma membrane, vacuole | 72.39 | 80.51 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 75.75 | 80.3 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 75.75 | 80.3 |
| Zm00001d014976_P001 | Maize | plasma membrane | 70.97 | 76.82 |
| EES04350 | Sorghum | plastid | 70.8 | 74.77 |
| KRH22855 | Soybean | peroxisome | 69.73 | 74.34 |
| KRH26509 | Soybean | peroxisome | 69.56 | 74.15 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 65.49 | 73.71 |
| KRH30604 | Soybean | peroxisome | 68.85 | 73.4 |
| GSMUA_Achr11P... | Banana | cytosol | 61.95 | 72.61 |
| PGSC0003DMT400050658 | Potato | plasma membrane | 55.75 | 72.58 |
| VIT_08s0040g01500.t01 | Wine grape | golgi, peroxisome, plasma membrane, plastid | 67.26 | 71.56 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 66.9 | 71.32 |
| CDY06298 | Canola | golgi, peroxisome, plasma membrane | 52.92 | 71.02 |
| PGSC0003DMT400092589 | Potato | plasma membrane | 66.73 | 70.6 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 30.97 | 70.28 |
| CDY32821 | Canola | cytosol, peroxisome, plasma membrane | 57.17 | 69.61 |
| CDX93591 | Canola | golgi, peroxisome, plasma membrane | 57.17 | 69.61 |
| Bra030713.1-P | Field mustard | golgi, peroxisome, plasma membrane | 64.96 | 69.25 |
| AT1G08090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 64.96 | 69.25 |
| CDX93592 | Canola | golgi, peroxisome, plasma membrane | 56.28 | 69.13 |
| CDY22704 | Canola | cytosol, peroxisome, plasma membrane | 56.64 | 69.11 |
| PGSC0003DMT400002924 | Potato | plasma membrane | 64.78 | 69.06 |
| Bra018656.1-P | Field mustard | golgi, peroxisome, plasma membrane | 59.47 | 68.99 |
| PGSC0003DMT400031306 | Potato | plasma membrane | 43.01 | 68.84 |
| Bra031610.1-P | Field mustard | golgi, peroxisome, plasma membrane | 64.42 | 68.81 |
| AT5G60770.1 | Thale cress | plasma membrane | 64.07 | 68.69 |
| CDY72274 | Canola | plasma membrane | 42.83 | 68.56 |
| CDY70994 | Canola | golgi, plasma membrane | 42.83 | 68.56 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 60.35 | 68.47 |
| Bra018655.1-P | Field mustard | golgi, peroxisome, plasma membrane | 60.71 | 68.46 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 63.54 | 68.38 |
| CDY22703 | Canola | golgi, peroxisome, plasma membrane | 60.71 | 68.33 |
| PGSC0003DMT400031304 | Potato | plasma membrane | 64.07 | 68.3 |
| Bra031611.1-P | Field mustard | golgi, peroxisome, plasma membrane | 61.06 | 68.18 |
| Bra034142.1-P | Field mustard | plasma membrane | 18.58 | 68.18 |
| CDY06299 | Canola | golgi, peroxisome, plasma membrane | 61.06 | 68.18 |
| Bra002453.1-P | Field mustard | golgi, peroxisome, plasma membrane, plastid | 63.54 | 68.12 |
| Solyc11g069750.1.1 | Tomato | extracellular | 63.19 | 68.0 |
| CDY68730 | Canola | endoplasmic reticulum, plasma membrane | 47.26 | 67.94 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 53.63 | 67.94 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 21.95 | 67.76 |
| AT1G08100.1 | Thale cress | cytosol, peroxisome, plasma membrane | 61.24 | 66.28 |
| PGSC0003DMT400040689 | Potato | plasma membrane | 60.35 | 65.08 |
| AT5G60780.1 | Thale cress | peroxisome | 61.77 | 64.75 |
| Bra038302.1-P | Field mustard | peroxisome | 61.59 | 64.68 |
| AT3G45060.1 | Thale cress | peroxisome | 61.77 | 64.39 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 60.88 | 64.18 |
| Bra037625.1-P | Field mustard | peroxisome | 61.42 | 64.14 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 59.47 | 63.88 |
| CDY69111 | Canola | peroxisome | 54.16 | 63.75 |
| CDY50324 | Canola | plasma membrane | 54.16 | 63.75 |
| Bra037626.1-P | Field mustard | peroxisome | 60.88 | 63.0 |
| Bra020230.1-P | Field mustard | peroxisome | 54.34 | 62.91 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 16.81 | 61.69 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 59.12 | 61.51 |
| CDY26984 | Canola | plasma membrane | 48.85 | 60.53 |
| CDY53125 | Canola | plastid | 18.23 | 55.98 |
| TraesCS3B01G285900.1 | Wheat | plasma membrane | 50.44 | 55.45 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 7.79 | 52.38 |
| CDX99169 | Canola | cytosol | 6.55 | 49.33 |
| AT4G14358.1 | Thale cress | cytosol | 6.9 | 44.83 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 36.46 | 39.85 |
| TraesCS7B01G328700.1 | Wheat | golgi, peroxisome, plasma membrane | 33.1 | 38.48 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G044400.1 | EnsemblPlantsGene:TraesCS6B01G044400 | Gene3D:1.20.1250.20 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom |
| InterPro:MFS_trans_sf | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | PFAM:PF07690 | SEG:seg | SUPFAM:SSF103473 |
| TIGR:cd06174 | TMHMM:TMhelix | MapMan:24.2.2.10 | MapMan:25.1.3.1 | : | : |
Description
No Description!
Coordinates
chr6B:-:26633269..26634966
Molecular Weight (calculated)
60985.0 Da
IEP (calculated)
8.356
GRAVY (calculated)
0.271
Length
565 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPALYPTI NTQSIQDPKH QTTQPLATPS CRPLQVAKLS SKELAEKKPS SVRTGEADME VEASAHGDTA ASKFTLPVDS EHKAKSFRLF SFANPHMRTF
101: HLSWISFFTC FVSTFAAAPL VPIIRDNLNL AKADIGNAGV ASVSGSIFSR LAMGAICDLL GPRYGCAFLV MLSAPTVFCM AVIDDASGYI AVRFLIGFSL
201: ATFVSCQYWM STMFNSKIIG TVNGLAAGWG NMGGGATQLI MPLVFHAIQK CGATPFVAWR IAYFVPGMMH IVMGLLVLTM GQDLPDGNLA SLQKKGDMAK
301: DKFSKVLWGA VTNYRTWIFV LLYGYCMGVE LTTDNVIAEY YYDHFHLDLR AAGTIAACFG MANIVARPMG GYLSDLGARY FGMRARLWNI WILQTAGGAF
401: CIWLGRASAL PASVTAMVLF SICAQAACGA VFGVAPFVSR RSLGIISGLT GAGGNVGAGL TQLLFFTSSQ YSTGRGLEYM GIMIMACTLP VALVHFPQWG
501: SMFFPASADA TEEEYYASEW SEEEKSKGLH IAGQKFAENS RSERGRRNVV LATSATPPNN TPQHV
101: HLSWISFFTC FVSTFAAAPL VPIIRDNLNL AKADIGNAGV ASVSGSIFSR LAMGAICDLL GPRYGCAFLV MLSAPTVFCM AVIDDASGYI AVRFLIGFSL
201: ATFVSCQYWM STMFNSKIIG TVNGLAAGWG NMGGGATQLI MPLVFHAIQK CGATPFVAWR IAYFVPGMMH IVMGLLVLTM GQDLPDGNLA SLQKKGDMAK
301: DKFSKVLWGA VTNYRTWIFV LLYGYCMGVE LTTDNVIAEY YYDHFHLDLR AAGTIAACFG MANIVARPMG GYLSDLGARY FGMRARLWNI WILQTAGGAF
401: CIWLGRASAL PASVTAMVLF SICAQAACGA VFGVAPFVSR RSLGIISGLT GAGGNVGAGL TQLLFFTSSQ YSTGRGLEYM GIMIMACTLP VALVHFPQWG
501: SMFFPASADA TEEEYYASEW SEEEKSKGLH IAGQKFAENS RSERGRRNVV LATSATPPNN TPQHV
001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
Arabidopsis Description
NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.