Factsheet for VIT_08s0040g01500.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plastid, plasma membrane

Predictor Summary:

nucleus 1
plastid 2
golgi 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g00320.t01	Wine grape	peroxisome	84.93	85.09
PGSC0003DMT400092589	Potato	plasma membrane	83.05	82.58
VIT_06s0061g00310.t01	Wine grape	plasma membrane	37.85	80.72
GSMUA_Achr8P14230_001	Banana	golgi, peroxisome, plasma membrane	76.27	80.68
GSMUA_Achr11P...	Banana	cytosol	72.32	79.67
TraesCS6A01G030900.1	Wheat	plasma membrane	71.19	74.56
TraesCS6D01G035900.1	Wheat	plasma membrane	71.19	74.56
TraesCS6B01G044300.1	Wheat	plasma membrane	71.0	74.36
TraesCS6A01G030700.1	Wheat	plastid	71.0	74.36
TraesCS6B01G044200.1	Wheat	plasma membrane	71.0	74.36
TraesCS6D01G035700.1	Wheat	plasma membrane	71.0	74.36
TraesCS6B01G044100.1	Wheat	plastid	70.81	74.16
TraesCS6A01G031100.1	Wheat	plastid	70.81	74.16
TraesCS6A01G031000.1	Wheat	plasma membrane	70.81	74.16
TraesCS6A01G030800.1	Wheat	plasma membrane	70.81	74.16
Zm00001d054060_P001	Maize	plastid	73.07	74.05
TraesCS6D01G035800.1	Wheat	plasma membrane	70.62	73.96
Os02t0112100-01	Rice	golgi, plasma membrane, plastid	74.2	73.92
Os02t0112600-01	Rice	golgi, plasma membrane, plastid	74.2	73.92
Zm00001d054057_P001	Maize	extracellular	72.88	73.86
HORVU6Hr1G005590.1	Barley	plasma membrane	70.43	73.77
EES04351	Sorghum	golgi, peroxisome, plasma membrane	73.07	73.62
EES06135	Sorghum	golgi, peroxisome, plasma membrane	73.07	73.62
TraesCS6D01G035600.1	Wheat	plasma membrane	70.24	73.28
TraesCS6B01G044000.1	Wheat	plasma membrane	70.24	73.28
HORVU6Hr1G005570.1	Barley	golgi, plasma membrane	37.48	73.16
TraesCS6A01G031200.1	Wheat	plasma membrane	69.87	72.89
HORVU6Hr1G005780.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	61.39	70.72
HORVU6Hr1G005600.2	Barley	endoplasmic reticulum	67.61	70.53
TraesCS6D01G038100.1	Wheat	golgi, plasma membrane, vacuole	66.67	69.55
TraesCS6B01G046600.1	Wheat	plasma membrane	66.48	69.35
TraesCS6D01G037900.1	Wheat	plasma membrane	66.48	69.35
HORVU6Hr1G005750.1	Barley	cytosol, plastid	13.18	69.31
TraesCS6D01G037200.1	Wheat	golgi, plasma membrane, plastid	66.29	69.29
TraesCS6B01G046500.1	Wheat	plasma membrane	66.1	69.23
TraesCS6D01G037800.1	Wheat	plasma membrane	66.1	69.23
TraesCS6A01G032500.1	Wheat	plastid	66.1	69.09
TraesCS6D01G037300.1	Wheat	golgi, plasma membrane, plastid	66.1	69.09
TraesCS6A01G032400.1	Wheat	plastid	66.1	69.09
TraesCS6A01G032800.1	Wheat	plasma membrane	65.91	69.03
TraesCS6B01G045700.1	Wheat	plastid	65.72	68.97
TraesCS6A01G033000.1	Wheat	plasma membrane	66.1	68.96
TraesCS6B01G045600.1	Wheat	golgi, plasma membrane, vacuole	65.91	68.9
HORVU6Hr1G005580.1	Barley	plastid	70.62	68.81
TraesCS6A01G032900.1	Wheat	golgi, plasma membrane, vacuole	65.91	68.76
TraesCS6B01G046700.1	Wheat	plasma membrane	65.72	68.7
TraesCS6A01G033200.1	Wheat	plasma membrane	65.72	68.7
HORVU6Hr1G005770.1	Barley	plasma membrane	65.72	68.57
HORVU6Hr1G005930.1	Barley	plasma membrane	65.35	68.31
TraesCS6D01G038200.1	Wheat	plasma membrane	65.35	68.31
TraesCS6D01G038300.1	Wheat	plasma membrane	65.16	68.11
TraesCS6A01G033100.1	Wheat	plasma membrane	65.16	68.11
TraesCS6D01G038000.1	Wheat	plasma membrane	64.97	68.05
TraesCS2A01G074800.1	Wheat	plasma membrane	64.03	67.73
TraesCS6B01G044500.1	Wheat	plastid	61.77	67.63
HORVU6Hr1G005720.1	Barley	extracellular	48.21	67.55
TraesCS2D01G073500.1	Wheat	plasma membrane	63.28	67.33
TraesCS6B01G044400.1	Wheat	plastid	71.56	67.26
EES04350	Sorghum	plastid	67.23	66.73
Zm00001d014976_P001	Maize	plasma membrane	65.54	66.67
VIT_01s0127g00070.t01	Wine grape	plasma membrane	58.19	61.19
VIT_14s0066g00850.t01	Wine grape	plasma membrane	46.33	54.07

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100263699	wikigene:100263699	MapMan:24.2.2.10	MapMan:25.1.3.1	ProteinID:CCB57098
ProteinID:CCB57098.1	UniProt:F6HR49	EMBL:FN596008	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0015112	GO:GO:0015706	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:0071249	InterPro:IPR020846	EntrezGene:LOC100263699	wikigene:LOC100263699
InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF07690	PFscan:PS50850	PANTHER:PTHR23515
PANTHER:PTHR23515:SF3	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI00015CADAE	ArrayExpress:VIT_08s0040g01500	EnsemblPlantsGene:VIT_08s0040g01500
EnsemblPlants:VIT_08s0040g01500.t01	RefSeq:XP_002276817	RefSeq:XP_002276817.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:12658421..12660431

Molecular Weight (calculated)

57281.2 Da

IEP (calculated)

9.252

GRAVY (calculated)

0.418

Length

531 amino acids

Sequence
(BLAST)

001: MADIQGSPGS SMHGVTGREQ TFAFSVASPA IPTDTTAKFA LPVDSEHKAK VFKVFSFAKP HMRTFHLSWV SFFTCFVSTF AAAPLVPVIR DNLNLRKSDI
101: GNAGIASVSG SIFSRLVMGA VCDLLGPRYG CAFLMMLSAP AVFCMSFVSS AEGYIAVRFM IGFSLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ATQLLMPVIF EIICRVGVTP FMAWRVAFFI PGCLHVIMGI LVLSLGQDLP DGNLGTLQKK GDVSKDKFSK VLWYAITNYR TWIFVLLYGF SLGVELTADN
301: VIAEYFYDRF DLKLHTAGTI AATFGMANIV ARPMGGLMSD LAARRFGMRG RLWNLWILQT LGGVFCICLG RANSLPISIS SMILFSIGAQ AACGATFGII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQWLF FTSSKYSTAT GISLMGIMIV ACTLPVALVH FPQWGSMLLP PSKDAVRSCE EYYYGSEWNE AEKQKGLHQG
501: SLKFAENSKS ERGRRVVSAP TPPTATPPAS V

Best Arabidopsis Sequence Match ( AT5G60770.1 )
(BLAST)

001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV

Arabidopsis Description

NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.