Factsheet for VIT_01s0127g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45628	Soybean	plasma membrane	79.8	79.33
KRG99396	Soybean	plasma membrane	79.8	79.02
PGSC0003DMT400043794	Potato	plasma membrane	74.65	75.4
AT1G12940.1	Thale cress	plasma membrane	73.86	74.3
CDY21075	Canola	plasma membrane	73.27	74.15
CDY34599	Canola	plasma membrane	72.87	73.9
GSMUA_Achr4P06400_001	Banana	plasma membrane	66.73	73.26
GSMUA_Achr4P13270_001	Banana	plasma membrane	64.95	71.46
EES01339	Sorghum	plasma membrane	70.5	69.13
TraesCS3A01G254000.1	Wheat	plasma membrane	68.51	67.32
Zm00001d011679_P001	Maize	plasma membrane	69.11	67.12
HORVU3Hr1G066090.1	Barley	plasma membrane	68.12	66.93
TraesCS3B01G285900.1	Wheat	plasma membrane	68.12	66.93
TraesCS3D01G254900.1	Wheat	plasma membrane	68.12	66.93
TraesCSU01G002800.1	Wheat	plasma membrane	67.92	66.6
TraesCS1D01G035700.1	Wheat	plasma membrane	67.13	65.44
Os01t0704100-02	Rice	plasma membrane	66.53	65.12
VIT_14s0066g00850.t01	Wine grape	plasma membrane	58.61	65.05
VIT_06s0061g00310.t01	Wine grape	plasma membrane	31.49	63.86
VIT_06s0061g00320.t01	Wine grape	peroxisome	61.19	58.3
VIT_08s0040g01500.t01	Wine grape	golgi, peroxisome, plasma membrane, plastid	61.19	58.19
Bra016747.1-P	Field mustard	plasma membrane	61.39	53.91

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100260250	wikigene:100260250	MapMan:24.2.2.10	MapMan:25.1.3.1	ProteinID:CCB51808
ProteinID:CCB51808.1	UniProt:F6HHT1	EMBL:FN595761	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0015112	GO:GO:0015706	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:0071249	InterPro:IPR020846	EntrezGene:LOC100260250	wikigene:LOC100260250
InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF07690	PANTHER:PTHR23515	PANTHER:PTHR23515:SF3
SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI00015CCCE3	ArrayExpress:VIT_01s0127g00070	EnsemblPlantsGene:VIT_01s0127g00070	EnsemblPlants:VIT_01s0127g00070.t01
unigene:Vvi.20128	RefSeq:XP_002266184	RefSeq:XP_002266184.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:7422778..7426109

Molecular Weight (calculated)

54774.6 Da

IEP (calculated)

9.196

GRAVY (calculated)

0.374

Length

505 amino acids

Sequence
(BLAST)

001: MSMEISEPEP QHPKFALPVD SEHKATEFPL FSVAAPHMRA FHLSWISFFA CFVSSFAAPP LIPVIRDNLN LTATDIGNAG IASVSGAVFA RIAMGSACDL
101: FGPRLASASL ILLTAPAVYF TSYISSPISF LLVRFFTGFS LSTFVSTQFW MSSMFSAPVV GAANGFAGGW GNLGGGATQL IMPLVFSLIR DMGAVKFTAW
201: RIAFFIPALF QTLSAFAVLL FGQDTPDGNF KRLNKSGDRP KDKFSQVFYH GVTNYRAWIL ALTYGYCFGV ELTVDNIIAE YFYDRFNLKL HTAGIIAASF
301: GLANLISRPA GGFISDAMAK RFGMRGRLWT LWVVQTLGGV LCIILGRVGS LNASIIVMIA FSLFVQAACG LTFGVVPFIS RRSLGVVSGM TGGGGNVGAV
401: LTQLIFFKGS RYSKETGITL MGIMMLCCTL PICLIYFPQW GGMFCGPSSK ENATEEDYYS SEWNSKEKEK GFHHGSLKFA DNSRGERGRR VGSAATPDRT
501: SSMHV

Best Arabidopsis Sequence Match ( AT1G12940.1 )
(BLAST)

001: MEVEGKGGEA GTTTTTAPRR FALPVDAENK ATTFRLFSVA KPHMRAFHLS WFQFFCCFVS TFAAPPLLPV IRENLNLTAT DIGNAGIASV SGAVFARIVM
101: GTACDLFGPR LASAALTLST APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG GGATQLIMPI VFSLIRNMGA
201: TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG
301: IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG
401: GNVGAVLTQL IFFKGSTYTR ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG SQKFAETSIS ERGRATTTHP
501: QT

Arabidopsis Description

NRT2.5High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.