Factsheet for VIT_14s0066g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g04510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14570.1	VIT_04s0008g04510.t01	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017804	Potato	plasma membrane	67.69	72.64
Solyc02g067790.2.1	Tomato	golgi, peroxisome, plasma membrane	71.65	70.87
GSMUA_Achr1P25450_001	Banana	plasma membrane	62.64	61.29
AT5G14570.1	Thale cress	plastid	63.96	59.03
VIT_01s0127g00070.t01	Wine grape	plasma membrane	65.05	58.61
CDX85593	Canola	golgi, peroxisome, plasma membrane, plastid	61.98	58.26
Bra023475.1-P	Field mustard	plastid	61.76	58.06
CDX91044	Canola	golgi, peroxisome, plasma membrane, plastid	62.2	56.37
HORVU7Hr1G098550.3	Barley	plasma membrane	50.55	47.62
OQU87011	Sorghum	plasma membrane	50.33	47.31
TraesCS7D01G420900.1	Wheat	golgi, peroxisome, plasma membrane	49.89	47.0
VIT_06s0061g00320.t01	Wine grape	peroxisome	54.73	46.98
TraesCS7B01G328700.1	Wheat	golgi, peroxisome, plasma membrane	50.11	46.91
Zm00001d044504_P001	Maize	plasma membrane	49.67	46.6
VIT_06s0061g00310.t01	Wine grape	plasma membrane	25.49	46.59
Os01t0547600-01	Rice	plasma membrane	49.45	46.39
VIT_08s0040g01500.t01	Wine grape	golgi, peroxisome, plasma membrane, plastid	54.07	46.33
TraesCS7A01G428500.1	Wheat	golgi, peroxisome, plasma membrane	44.4	43.16
Zm00001d025783_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid, vacuole	17.58	41.45
Zm00001d016468_P001	Maize	plasma membrane	18.02	38.32

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100261203	wikigene:100261203	MapMan:24.2.2.10	MapMan:25.1.3.1	EMBL:AM430487
ProteinID:CAN60427	ProteinID:CAN60427.1	ProteinID:CCB58492	ProteinID:CCB58492.1	UniProt:F6HUX4	EMBL:FN596252
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987
GO:GO:0015112	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0071249
InterPro:IPR020846	EntrezGene:LOC100261203	wikigene:LOC100261203	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf
PFAM:PF07690	ScanProsite:PS00216	PFscan:PS50850	PANTHER:PTHR23515	PANTHER:PTHR23515:SF5	SUPFAM:SSF103473
InterPro:Sugar_transporter_CS	TIGR:TC56068	TMHMM:TMhelix	UniParc:UPI00015C9F97	ArrayExpress:VIT_14s0066g00850	EnsemblPlantsGene:VIT_14s0066g00850
EnsemblPlants:VIT_14s0066g00850.t01	unigene:Vvi.15669	RefSeq:XP_002273595	RefSeq:XP_002273595.1	RefSeq:XP_010660878.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:27319398..27322165

Molecular Weight (calculated)

49486.6 Da

IEP (calculated)

8.310

GRAVY (calculated)

0.630

Length

455 amino acids

Sequence
(BLAST)

001: MESKESQFAL PVDSEHKATV FHPFSLAAPH MRAFHLAWLS LFATFFSTFA IPPLLPIIRE DLKLTDTDIG NAGIASFMGS IFSRLAMGTA CDVFGPRIAC
101: ATLSLLTVPI VFSACFISTP QSFIVLRFLI GFSLANFISN QFWMSSMFSG CVVGLANGVA AGWANVGAGA TQLIMPLIFA FITSFNVPAF TAWRIAFVVP
201: ALFQAVTALM VLFYGQDLPD GNYKRRQRSS TKPRESVFKV LLHGLSNYRG WVLGLTYGYC FGVELTVDNI IAQYFYDRFN LNIETAGAIA ASFGVVNFFS
301: RPAGGVISDE MGRRFGIRGR LWSLWIVQTV AGLLCILLGR VNTLGASILV ICAFSVFVQA ASGLTFGVVP FVSKRSLGVI SGMTGSGGTV GAVVTQLLLF
401: SGSKYSKETS ISLMGVMMIV CSIPVTFIYF PQWGGMFCGP SYDSDWVDEE YRLIE

Best Arabidopsis Sequence Match ( AT1G12940.1 )
(BLAST)

001: MEVEGKGGEA GTTTTTAPRR FALPVDAENK ATTFRLFSVA KPHMRAFHLS WFQFFCCFVS TFAAPPLLPV IRENLNLTAT DIGNAGIASV SGAVFARIVM
101: GTACDLFGPR LASAALTLST APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG GGATQLIMPI VFSLIRNMGA
201: TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG
301: IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG
401: GNVGAVLTQL IFFKGSTYTR ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG SQKFAETSIS ERGRATTTHP
501: QT

Arabidopsis Description

NRT2.5High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.