Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d011723_P002 | |
| Zm00001d011729_P002 | |
| Zm00001d016987_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14570.1 | Zm00001d011723_P002 | AT4G32650.1 | 15299147 |
| AT5G14570.1 | Zm00001d011729_P002 | AT4G32650.1 | 15299147 |
| AT5G14570.1 | Zm00001d016987_P001 | AT4G32650.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU87011 | Sorghum | plasma membrane | 92.37 | 92.56 |
| Zm00001d025783_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid, vacuole | 36.29 | 91.19 |
| Zm00001d016468_P001 | Maize | plasma membrane | 39.38 | 89.25 |
| Os01t0547600-01 | Rice | plasma membrane | 79.79 | 79.79 |
| TraesCS7B01G328700.1 | Wheat | golgi, peroxisome, plasma membrane | 79.79 | 79.63 |
| TraesCS7D01G420900.1 | Wheat | golgi, peroxisome, plasma membrane | 79.18 | 79.5 |
| HORVU7Hr1G098550.3 | Barley | plasma membrane | 78.14 | 78.47 |
| TraesCS7A01G428500.1 | Wheat | golgi, peroxisome, plasma membrane | 71.13 | 73.72 |
| GSMUA_Achr1P25450_001 | Banana | plasma membrane | 54.23 | 56.56 |
| VIT_14s0066g00850.t01 | Wine grape | plasma membrane | 46.6 | 49.67 |
| PGSC0003DMT400017804 | Potato | plasma membrane | 42.89 | 49.06 |
| Solyc02g067790.2.1 | Tomato | golgi, peroxisome, plasma membrane | 45.36 | 47.83 |
| AT5G14570.1 | Thale cress | plastid | 44.95 | 44.22 |
| CDX85593 | Canola | golgi, peroxisome, plasma membrane, plastid | 44.12 | 44.21 |
| Bra023475.1-P | Field mustard | plastid | 43.92 | 44.01 |
| CDX91044 | Canola | golgi, peroxisome, plasma membrane, plastid | 44.12 | 42.63 |
| Zm00001d011679_P001 | Maize | plasma membrane | 44.12 | 41.15 |
| Zm00001d014976_P001 | Maize | plasma membrane | 40.82 | 37.93 |
| Zm00001d054060_P001 | Maize | plastid | 39.18 | 36.26 |
| Zm00001d054057_P001 | Maize | extracellular | 38.97 | 36.07 |
Protein Annotations
| EnsemblPlants:Zm00001d044504_P001 | EnsemblPlants:Zm00001d044504_T001 | EnsemblPlantsGene:Zm00001d044504 | Gene3D:1.20.1250.20 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:MFS | InterPro:MFS_trans_sf |
| PANTHER:PTHR23515 | PANTHER:PTHR23515:SF5 | PFAM:PF07690 | ProteinID:ONM41423.1 | SEG:seg | SUPFAM:SSF103473 |
| TMHMM:TMhelix | UniParc:UPI0001534ECA | UniProt:A0A1D6NMM6 | MapMan:24.2.2.10 | MapMan:25.1.3.1 | : |
Description
High affinity nitrate transporter 2.7
Coordinates
chr3:-:230035173..230038705
Molecular Weight (calculated)
49776.8 Da
IEP (calculated)
8.154
GRAVY (calculated)
0.651
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAMGKKQQL ADDEENCCYG VGSSEAECGV DAEFRATDLR PLSLLSPHTQ AFHLAWLSLF ACFFAAFAAP PILPALRPAL VLAPSDAPAA AVGSLSATLV
101: GRLAMGPACD LLGPRRASGF ASLLAALAVA VTAVTASSPA GFVALRFVAG LSLANFVANQ HWMSGIFAPS AVGLANAVTA GWANVGSAAA QLVMPLAYEL
201: VLRLGVPITV AWRVTYLLPC ALLITTGLAV LAFPYDLPRG AGVGGGAKTG KSLWKVVRGG VSNYRAWVLA LTYGYCYGVE LIMENVAADF FRKRFHLPME
301: AAGAAAACFG AMNAVARPAG GLASDAVARL FGMRGRLWLL WAVQTTGAAL CVLVGRMGAA EAPSLAATMA VMVLCAAFVQ ASSGLTFGIV PFVSKRSLGV
401: VSGMTASGGA VGAIVTNRLF FSGSRYTIEE AISLTGAASL VCTLPLALVH FPRHGGMLCG PTAVVDGDDA GYDNDNSAGD YTLLK
101: GRLAMGPACD LLGPRRASGF ASLLAALAVA VTAVTASSPA GFVALRFVAG LSLANFVANQ HWMSGIFAPS AVGLANAVTA GWANVGSAAA QLVMPLAYEL
201: VLRLGVPITV AWRVTYLLPC ALLITTGLAV LAFPYDLPRG AGVGGGAKTG KSLWKVVRGG VSNYRAWVLA LTYGYCYGVE LIMENVAADF FRKRFHLPME
301: AAGAAAACFG AMNAVARPAG GLASDAVARL FGMRGRLWLL WAVQTTGAAL CVLVGRMGAA EAPSLAATMA VMVLCAAFVQ ASSGLTFGIV PFVSKRSLGV
401: VSGMTASGGA VGAIVTNRLF FSGSRYTIEE AISLTGAASL VCTLPLALVH FPRHGGMLCG PTAVVDGDDA GYDNDNSAGD YTLLK
001: MEVEGKGGEA GTTTTTAPRR FALPVDAENK ATTFRLFSVA KPHMRAFHLS WFQFFCCFVS TFAAPPLLPV IRENLNLTAT DIGNAGIASV SGAVFARIVM
101: GTACDLFGPR LASAALTLST APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG GGATQLIMPI VFSLIRNMGA
201: TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG
301: IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG
401: GNVGAVLTQL IFFKGSTYTR ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG SQKFAETSIS ERGRATTTHP
501: QT
101: GTACDLFGPR LASAALTLST APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG GGATQLIMPI VFSLIRNMGA
201: TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG
301: IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG
401: GNVGAVLTQL IFFKGSTYTR ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG SQKFAETSIS ERGRATTTHP
501: QT
Arabidopsis Description
NRT2.5High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.