CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plastid, plasma membrane

Predictor Summary:

plastid 3
golgi 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68872
CDX72366
CDX75267
CDY13496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14570.1	CDX68872	AT4G32650.1	15299147
AT5G14570.1	CDX72366	AT4G32650.1	15299147
AT5G14570.1	CDX75267	AT4G32650.1	15299147
AT5G14570.1	CDY13496	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023475.1-P	Field mustard	plastid	98.55	98.55
CDX91044	Canola	golgi, peroxisome, plasma membrane, plastid	96.07	92.63
AT5G14570.1	Thale cress	plastid	84.71	83.16
PGSC0003DMT400017804	Potato	plasma membrane	55.58	63.44
VIT_14s0066g00850.t01	Wine grape	plasma membrane	58.26	61.98
Solyc02g067790.2.1	Tomato	golgi, peroxisome, plasma membrane	58.88	61.96
GSMUA_Achr1P25450_001	Banana	plasma membrane	53.1	55.27
CDY21075	Canola	plasma membrane	50.21	48.7
CDY34599	Canola	plasma membrane	50.0	48.59
HORVU7Hr1G098550.3	Barley	plasma membrane	46.28	46.38
CDY06298	Canola	golgi, peroxisome, plasma membrane	40.29	46.32
Os01t0547600-01	Rice	plasma membrane	46.28	46.19
TraesCS7D01G420900.1	Wheat	golgi, peroxisome, plasma membrane	45.87	45.96
TraesCS7B01G328700.1	Wheat	golgi, peroxisome, plasma membrane	45.87	45.68
OQU87011	Sorghum	plasma membrane	45.25	45.25
Zm00001d044504_P001	Maize	plasma membrane	44.21	44.12
CDX93592	Canola	golgi, peroxisome, plasma membrane	40.7	42.83
TraesCS7A01G428500.1	Wheat	golgi, peroxisome, plasma membrane	41.32	42.73
CDY22703	Canola	golgi, peroxisome, plasma membrane	44.21	42.63
CDY06299	Canola	golgi, peroxisome, plasma membrane	44.42	42.49
CDX93591	Canola	golgi, peroxisome, plasma membrane	40.5	42.24
CDY32821	Canola	cytosol, peroxisome, plasma membrane	40.08	41.81
CDY22704	Canola	cytosol, peroxisome, plasma membrane	39.88	41.68
Zm00001d025783_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid, vacuole	16.53	41.45
CDY70994	Canola	golgi, plasma membrane	29.34	40.23
CDY72274	Canola	plasma membrane	29.13	39.94
CDY69111	Canola	peroxisome	39.26	39.58
CDY50324	Canola	plasma membrane	38.64	38.96
CDY68730	Canola	endoplasmic reticulum, plasma membrane	31.61	38.93
CDY31024	Canola	endoplasmic reticulum, plasma membrane	11.98	37.66
CDY26984	Canola	plasma membrane	34.3	36.4
Zm00001d016468_P001	Maize	plasma membrane	15.91	35.98
CDY53125	Canola	plastid	12.81	33.7
CDY31023	Canola	endoplasmic reticulum, extracellular	2.69	15.48
CDX99169	Canola	cytosol	2.27	14.67

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.10	MapMan:25.1.3.1	GO:A0A078DE72	EnsemblPlants:CDX85593	ProteinID:CDX85593
ProteinID:CDX85593.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00143316001	InterPro:IPR020846	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf
PFAM:PF07690	PFscan:PS50850	PANTHER:PTHR23515	PANTHER:PTHR23515:SF5	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0004EEDDBB	SEG:seg	:	:	:	:

Description

BnaA02g02200D

Coordinates

chrLK031842:+:811762..813555

Molecular Weight (calculated)

52065.0 Da

IEP (calculated)

7.703

GRAVY (calculated)

0.483

Length

484 amino acids

Sequence
(BLAST)

001: MEPSQRNTET PSFEYATVPV DSSGRATVFR PFSLSSPHSR AFHLAWLSLF SCFFSTFSIP PLIPVISSDL RLSASAVSAA GTASFAGSIF SRLAMGPLCD
101: LIGPRTSSAI LSFLTAPAIL STAFVSSPTS FVLVRFFVGF SLANFVANQY WMSSMFSGNV VGLANGVSAG WANVGAGLSQ LLMPILYTTI AEFLPRDVSW
201: RVSFVFPAVF QVITAVLVLL YGQDTPDGKR KAYKDRTQLE EEERSSFVRI LLDGLGDYRA WILALLYGYS FGVELTTDNM IAGYFYERFG VNLEAAGTIA
301: ASFAISNVAS RPAGGMVSDL LGKRFGMRGR LWGLWIVQSV AGLLCLLLGR VNSLWGSIAV MWVFSIFVQA ASGLIFGVVP FVSTRSLGVV AGMTGSGGTV
401: GAVVTQVLLF SGDNVRKQRS ISLMGLMTFV ASLSVTLIYF PRWGGIFCGP SSSSECDDCS QRLLGDEEED DDKVVISGRL RPVC

Best Arabidopsis Sequence Match ( AT5G14570.1 )
(BLAST)

001: MEPSQRNTKP PSFSDSTIPV DSDGRATVFR PFSLSSPHSR AFHLAWLSLF SCFFSTFSIP PLVPVISSDL NLSASTVSAA GIASFAGSIF SRLAMGPLCD
101: LIGPRTSSAI LSFLTAPVIL SASLVSSPTS FILVRFFVGF SLANFVANQY WMSSMFSGNV IGLANGVSAG WANVGAGISQ LLMPLIYSTI AEFLPRAVAW
201: RVSFVFPAIF QVTTAVLVLL YGQDTPHGNR KNSNQNKLTI PEEEEVLVVE EDERSSFVEI LIGGLGNYRA WILALLYGYS YGVELTTDNV IAGYFYERFG
301: VNLEAAGTIA ASFGISNIAS RPAGGMISDA LGKRFGMRGR LWGLWIVQSV AGLLCVLLGR VNSLWGSILV MWVFSVFVQA ASGLVFGVVP FVSTRSLGVV
401: AGITGSGGTV GAVVTQFLLF SGDDVRKQRS ISLMGLMTFV FALSVTSIYF PQWGGMCCGP SSSSEEEDIS RGLLVEDEDE EGKVVSGSLR PVC

Arabidopsis Description

NRT2.7NRT2.7 [Source:UniProtKB/TrEMBL;Acc:A0A178UKX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.