CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plasma membrane, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73732
CDX77994
CDX79135
CDX82921
CDX85593
CDX90652
CDX91044
CDY29012
CDY33284
CDY35373
CDY55714
CDY59407
CDY59617

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32650.1	CDY35373	AT2G26650.1	12678562
AT4G32650.1	CDY55714	AT2G26650.1	12678562
AT4G32650.1	CDY35373	AT2G26650.1	15299147
AT4G32650.1	CDY55714	AT2G26650.1	15299147
AT4G32650.1	CDX73732	AT3G51300.1	15299147
AT4G32650.1	CDX77994	AT3G51300.1	15299147
AT4G32650.1	CDX90652	AT3G51300.1	15299147
AT4G32650.1	CDY29012	AT3G51300.1	15299147
AT4G32650.1	CDY33284	AT3G51300.1	15299147
AT4G32650.1	CDY59407	AT3G51300.1	15299147
AT4G32650.1	CDY59617	AT3G51300.1	15299147
AT4G32650.1	CDX79135	AT4G22200.1	12678562
AT4G32650.1	CDX82921	AT4G22200.1	12678562
AT4G32650.1	CDX85593	AT5G14570.1	15299147
AT4G32650.1	CDX91044	AT5G14570.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75267	Canola	plastid	97.39	97.39
CDY13496	Canola	plastid	88.33	87.65
CDX72366	Canola	plastid	82.49	83.26
AT4G32650.1	Thale cress	plastid	83.56	82.18
HORVU3Hr1G068040.1	Barley	plasma membrane	35.64	54.21
Os01t0718700-00	Rice	endoplasmic reticulum, plasma membrane	30.41	53.08
GSMUA_Achr1P05260_001	Banana	plasma membrane	50.69	52.13
GSMUA_Achr5P09770_001	Banana	plasma membrane	51.77	51.61
Os04t0117500-00	Rice	plasma membrane	22.27	50.7
Os06t0254200-00	Rice	plasma membrane, plastid	44.39	47.38
TraesCS3D01G246300.1	Wheat	plastid	43.16	47.23
TraesCS3A01G245200.1	Wheat	mitochondrion	43.16	46.76
OQU87429	Sorghum	mitochondrion	42.4	44.16
Zm00001d011723_P002	Maize	cytosol, plasma membrane, plastid	42.7	43.44
Zm00001d011729_P002	Maize	cytosol	41.01	42.18
CDY03233	Canola	plasma membrane	40.71	40.4
CDY35154	Canola	plasma membrane	40.55	40.18
Zm00001d016987_P001	Maize	plasma membrane	36.1	39.9
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	36.25	39.27
TraesCS3B01G274500.1	Wheat	plastid	38.71	38.95
CDY33464	Canola	cytosol, plasma membrane, plastid	39.32	38.44
CDX78839	Canola	plasma membrane	39.78	37.87
CDY62359	Canola	cytosol, plasma membrane, plastid	38.71	37.84
CDX99479	Canola	plasma membrane	39.78	37.81
CDX76529	Canola	plasma membrane	37.17	33.99
CDX79135	Canola	plasma membrane	38.71	31.98
CDY35373	Canola	cytosol, plasma membrane, vacuole	41.17	31.16
CDY55714	Canola	cytosol, plasma membrane, vacuole	41.01	31.01
CDY34066	Canola	endoplasmic reticulum, plasma membrane	28.73	30.91
CDX68851	Canola	plasma membrane	38.25	29.05
CDX82921	Canola	cytosol	38.4	29.0
CDY11516	Canola	cytosol	38.86	28.85
CDX76746	Canola	cytosol	38.86	28.78
CDX75249	Canola	plasma membrane	38.71	28.77
CDX71184	Canola	plasma membrane	26.73	23.71
CDY51528	Canola	cytosol	29.65	23.28
CDY28715	Canola	cytosol	29.49	23.13
CDY32059	Canola	plasma membrane	28.88	22.98
CDX74231	Canola	plasma membrane	29.03	22.8
CDX92017	Canola	plasma membrane	28.88	22.68
CDY61287	Canola	plasma membrane	16.44	20.19
CDY10020	Canola	cytosol	6.76	12.9

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:A0A078BX47	EnsemblPlants:CDX68872
ProteinID:CDX68872	ProteinID:CDX68872.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005249
GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00130597001	InterPro:IPR000595	InterPro:IPR014710	InterPro:IPR021789	InterPro:Ion_trans_dom
InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PRINTS:PR01463
PFscan:PS50042	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF537	InterPro:RmlC-like_jellyroll	SMART:SM00100
SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0004EE5DDC	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom
SEG:seg	:	:	:	:	:

Description

BnaC01g05810D

Coordinates

chrLK031789:-:1670713..1674418

Molecular Weight (calculated)

74428.4 Da

IEP (calculated)

8.180

GRAVY (calculated)

-0.030

Length

651 amino acids

Sequence
(BLAST)

001: MSATTSEARS PLPLLFRGGR ASTAPLGTTE ERSPLSLLFR RRSSKDVKNI TSVSSSLLPA FGTVVDKNPS SKPFIVLPYD RRYRLWELYL VILVGYSAWA
101: SIFELAFEKA ADGAFLTIDL VVDFFFAVDI VLTFFVAYLD TSTYLIVDDY NLIARRYLKS LAFVMDVVST LPIQFIYKTV TGNSGRGQAF GFLNLLRLWR
201: LRRVAELFKR LEKDTLFNYF VIRVIKLLCV TIFWVHIGGC ILFWIAYHYP SPVDTWIGSQ VEDFKDRSIW LGYTYSMYWS IVTLTTVGYG DLHAVNTREK
301: TFNMFYMLFN IGLTAYIIGN MTNLVVHGAL RTFTMRSAFN HILRYTSKNK LPDMMRDQML AHMQLKFKTA ELKQEEVLQD LPKAIRSSIN EHLFRSVIEN
401: AYLFKGLPDG LIVQLVSNIK AEYFPPKMEM ILQNEIPTDF YILVSGGVEI IRSKGASEQV LAKLGPGDMA GEIGVVFNIP QPFTVRTRRL SQVIRIGHHR
501: FKEMVQSDIE DSKMIITNFM TYLKDLNDDL KKEIPFLRDL LANEDAQGTV HKEEAPQSNN DEIVMVPGDE NEKKEEHKRE GAPIRVIIHG HPPNQDNNNN
601: GRLVMLPDSI QLLFDLAEKK FGRRGSTIVM ADGAHVEQLD ALRENDNLYI F

Best Arabidopsis Sequence Match ( AT4G32650.1 )
(BLAST)

001: MSTTTTEARS PLPLLLRRGR SSTALSASTA EARSPLSILQ FRRRSSKDVR NITSVSSSLL PAFGTFIEDD NPSSKPFIVL HFDRRYRLWE LFLVILVGYS
101: AWASLFELAF EKAAEGALLT IDLVVDFFFA VDIILTFFVS YLDNTTYLNV TDHKLIAKRY LKSVAFVMDV ASTLPIQFIY KTITGDVGRG QAFGFLNLLR
201: LWRLRRVAEL FKRLEKDAHF NYFVIRVIKL LCVTIFWIHL AGCILYWIAY HYPRPTDTWI GSQVEDFKER SVWLGYTYSM YWSIVTLTTV GYGDLHAVNS
301: REKTFNMFYM LFNIGLTSYI IGIMTNLVVH GALRTFAMRS AINDILRYTS KNRLPDTMRE QMLAHMQLKF KTAELRQEEV LQDLPKAIRS SINQHLFRSI
401: IEEAYLFKGF PEGLLVQLVS QIQAEYFPPK MEIILQNEIP TDFYVIVSGG VDIIASKGVS EQVLAKLGPG SMAGEIGVVF NIPQPFTVRT RRLSQVIRIG
501: HHKFKEMVQS DNDVDAKMII ANFMTYLKGL NDELKKEIPF LRDLLDDADA QVQETVQSEE TPQSNDEEIV TVSRHENGQI EERRREGVPK RVIIHGQAPP
601: NQDNKNNGDS NGRLIILPDS IQLLFDLAEK KLGKRGSTIA MADGAHVEQI DALRENDHLY IF

Arabidopsis Description

KAT3KC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UVX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.