Factsheet for HORVU6Hr1G005570.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

mitochondrion 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
TargetP:	secretory
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G115500.4
HORVU6Hr1G053710.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08090.1	HORVU5Hr1G115500.4	AT5G50200.1	17012411
AT1G08090.1	HORVU6Hr1G053710.1	AT5G50200.1	17012411
AT5G60780.1	HORVU5Hr1G115500.4	AT5G50200.1	17012411
AT5G60780.1	HORVU6Hr1G053710.1	AT5G50200.1	17012411

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g00310.t01	Wine grape	plasma membrane	62.87	68.67
Solyc11g069760.1.1	Tomato	extracellular, plasma membrane	45.59	67.76
HORVU6Hr1G005720.1	Barley	extracellular	81.99	58.84
CDY53125	Canola	plastid	37.87	55.98
TraesCS6A01G030800.1	Wheat	plasma membrane	98.9	53.06
HORVU6Hr1G005590.1	Barley	plasma membrane	98.16	52.66
CDY72274	Canola	plasma membrane	68.01	52.41
CDY70994	Canola	golgi, plasma membrane	68.01	52.41
CDY31023	Canola	endoplasmic reticulum, extracellular	16.18	52.38
PGSC0003DMT400031306	Potato	plasma membrane	66.91	51.56
CDX99169	Canola	cytosol	13.6	49.33
HORVU6Hr1G005580.1	Barley	plastid	98.53	49.17
HORVU6Hr1G005780.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	82.72	48.81
HORVU6Hr1G005600.2	Barley	endoplasmic reticulum	89.71	47.94
TraesCS6B01G044400.1	Wheat	plastid	99.26	47.79
CDY68730	Canola	endoplasmic reticulum, plasma membrane	67.28	46.56
HORVU6Hr1G005770.1	Barley	plasma membrane	83.46	44.6
HORVU6Hr1G005930.1	Barley	plasma membrane	81.99	43.9
PGSC0003DMT400050658	Potato	plasma membrane	68.38	42.86
Zm00001d054057_P001	Maize	extracellular	82.35	42.75
Zm00001d054060_P001	Maize	plastid	82.35	42.75
GSMUA_Achr11P...	Banana	cytosol	75.74	42.74
Os02t0112100-01	Rice	golgi, plasma membrane, plastid	82.72	42.21
Os02t0112600-01	Rice	golgi, plasma membrane, plastid	82.72	42.21
EES06135	Sorghum	golgi, peroxisome, plasma membrane	81.25	41.94
EES04351	Sorghum	golgi, peroxisome, plasma membrane	81.25	41.94
GSMUA_Achr8P14230_001	Banana	golgi, peroxisome, plasma membrane	74.63	40.44
CDY26984	Canola	plasma membrane	67.28	40.13
Zm00001d014976_P001	Maize	plasma membrane	76.84	40.04
EES04350	Sorghum	plastid	77.21	39.25
KRH22855	Soybean	peroxisome	73.53	37.74
CDY31024	Canola	endoplasmic reticulum, plasma membrane	21.32	37.66
VIT_08s0040g01500.t01	Wine grape	golgi, peroxisome, plasma membrane, plastid	73.16	37.48
KRH26509	Soybean	peroxisome	72.43	37.17
KRH30604	Soybean	peroxisome	72.06	36.98
Bra018655.1-P	Field mustard	golgi, peroxisome, plasma membrane	68.01	36.93
VIT_06s0061g00320.t01	Wine grape	peroxisome	71.32	36.6
Bra020230.1-P	Field mustard	peroxisome	65.44	36.48
Solyc11g069750.1.1	Tomato	extracellular	68.75	35.62
PGSC0003DMT400050654	Potato	plasma membrane	68.75	35.62
PGSC0003DMT400002924	Potato	plasma membrane	69.12	35.47
PGSC0003DMT400092589	Potato	plasma membrane	69.49	35.39
Solyc06g010250.2.1	Tomato	plasma membrane	64.71	35.34
AT5G60770.1	Thale cress	plasma membrane	68.38	35.29
AT1G08090.1	Thale cress	cytosol, peroxisome, plasma membrane	68.75	35.28
Bra030713.1-P	Field mustard	golgi, peroxisome, plasma membrane	68.38	35.09
Bra031610.1-P	Field mustard	golgi, peroxisome, plasma membrane	68.01	34.97
CDX93591	Canola	golgi, peroxisome, plasma membrane	59.56	34.91
CDY50324	Canola	plasma membrane	61.4	34.79
CDY69111	Canola	peroxisome	61.4	34.79
CDY32821	Canola	cytosol, peroxisome, plasma membrane	59.19	34.7
CDY22704	Canola	cytosol, peroxisome, plasma membrane	58.82	34.56
Bra002453.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	66.54	34.35
PGSC0003DMT400031304	Potato	plasma membrane	66.91	34.34
CDX93592	Canola	golgi, peroxisome, plasma membrane	57.72	34.13
Bra038302.1-P	Field mustard	peroxisome	67.28	34.01
Bra031611.1-P	Field mustard	golgi, peroxisome, plasma membrane	63.24	33.99
CDY06299	Canola	golgi, peroxisome, plasma membrane	63.24	33.99
CDY22703	Canola	golgi, peroxisome, plasma membrane	62.5	33.86
AT5G60780.1	Thale cress	peroxisome	66.54	33.58
AT3G45060.1	Thale cress	peroxisome	66.18	33.21
PGSC0003DMT400040689	Potato	plasma membrane	63.97	33.21
Bra037625.1-P	Field mustard	peroxisome	65.44	32.9
AT1G08100.1	Thale cress	cytosol, peroxisome, plasma membrane	62.5	32.57
Bra002451.1-P	Field mustard	golgi, peroxisome, plasma membrane	63.6	32.28
Bra018656.1-P	Field mustard	golgi, peroxisome, plasma membrane	56.99	31.83
Bra037626.1-P	Field mustard	peroxisome	62.87	31.32
Solyc06g074990.1.1	Tomato	plasma membrane	59.56	30.8
Bra038301.1-P	Field mustard	golgi, peroxisome, plasma membrane	61.03	30.57
KRH25078	Soybean	peroxisome, plasma membrane, plastid, vacuole	48.53	29.6
HORVU3Hr1G066090.1	Barley	plasma membrane	54.78	28.99
CDY06298	Canola	golgi, peroxisome, plasma membrane	44.12	28.5
Solyc11g069740.1.1	Tomato	cytosol, peroxisome	47.06	24.76
HORVU7Hr1G098550.3	Barley	plasma membrane	36.76	20.7
Bra034142.1-P	Field mustard	plasma membrane	7.35	12.99
AT4G14358.1	Thale cress	cytosol	2.94	9.2
HORVU6Hr1G005750.1	Barley	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU6Hr1G005570.1	EnsemblPlantsGene:HORVU6Hr1G005570	Gene3D:1.20.1250.20	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_trans_sf	PANTHER:PTHR23515	PANTHER:PTHR23515:SF3	SEG:seg
SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI000B473635	UniProt:A0A287T7V8	MapMan:24.2.2.10	MapMan:25.1.3.1

Description

No Description!

Coordinates

chrchr6H:+:12363356..12364512

Molecular Weight (calculated)

29614.7 Da

IEP (calculated)

8.347

GRAVY (calculated)

0.185

Length

272 amino acids

Sequence
(BLAST)

001: KKGDMAKDKF SKVLWGAVTN YRTWIFVLLY GYCMGVELTT DNVIAEYYYD HFHLDLRAAG TIAACFGMAN IVARPMGGYL SDLGARYFGM RARLWNIWIL
101: QTAGGAFCIW LGRASALPAS VTAMVLFSIC AQAACGAVFG VAPFVSRRSL GIISGLTGAG GNVGAGLTQL LFFTSSQYST GRGLEYMGIM IMACTLPVAL
201: VHFPQWGSMF FPASVDATEE EYYASEWSEE EKSKGLHIAG QKFAENSRSE RGRRNVILAT SATPPNNTPQ HV

Best Arabidopsis Sequence Match ( AT1G08090.1 )
(BLAST)

001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV

Arabidopsis Description

NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.