Factsheet for PGSC0003DMT400050654

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
golgi 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400046695

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60780.1	PGSC0003DMT400046695	AT5G50200.1	17012411

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069750.1.1	Tomato	extracellular	97.33	97.33
PGSC0003DMT400040689	Potato	plasma membrane	79.43	79.58
HORVU6Hr1G005750.1	Barley	cytosol, plastid	14.67	76.24
VIT_06s0061g00310.t01	Wine grape	plasma membrane	35.05	73.9
Bra034142.1-P	Field mustard	plasma membrane	21.33	72.73
VIT_06s0061g00320.t01	Wine grape	peroxisome	72.57	71.89
KRH22855	Soybean	peroxisome	72.57	71.89
KRH26509	Soybean	peroxisome	72.38	71.7
PGSC0003DMT400050658	Potato	plasma membrane	59.24	71.66
KRH30604	Soybean	peroxisome	72.0	71.32
TraesCS6B01G044200.1	Wheat	plasma membrane	68.0	70.41
TraesCS6D01G035800.1	Wheat	plasma membrane	67.81	70.22
HORVU6Hr1G005590.1	Barley	plasma membrane	67.81	70.22
TraesCS6B01G044100.1	Wheat	plastid	67.81	70.22
TraesCS6A01G031000.1	Wheat	plasma membrane	67.81	70.22
TraesCS6B01G044300.1	Wheat	plasma membrane	67.81	70.22
TraesCS6D01G035700.1	Wheat	plasma membrane	67.81	70.22
TraesCS6D01G035900.1	Wheat	plasma membrane	67.81	70.22
TraesCS6A01G030800.1	Wheat	plasma membrane	67.62	70.02
TraesCS6A01G030700.1	Wheat	plastid	67.62	70.02
TraesCS6A01G031100.1	Wheat	plastid	67.62	70.02
PGSC0003DMT400031306	Potato	plasma membrane	47.05	69.97
TraesCS6A01G030900.1	Wheat	plasma membrane	67.43	69.82
AT5G60780.1	Thale cress	peroxisome	71.05	69.2
AT3G45060.1	Thale cress	peroxisome	71.43	69.19
CDY69111	Canola	peroxisome	63.24	69.17
CDY50324	Canola	plasma membrane	63.24	69.17
PGSC0003DMT400092589	Potato	plasma membrane	70.29	69.1
Bra037625.1-P	Field mustard	peroxisome	70.86	68.76
HORVU6Hr1G005570.1	Barley	golgi, plasma membrane	35.62	68.75
Bra002451.1-P	Field mustard	golgi, peroxisome, plasma membrane	70.1	68.66
Bra020230.1-P	Field mustard	peroxisome	63.81	68.65
PGSC0003DMT400002924	Potato	plasma membrane	69.14	68.49
Bra038302.1-P	Field mustard	peroxisome	70.1	68.4
GSMUA_Achr8P14230_001	Banana	golgi, peroxisome, plasma membrane	65.33	68.33
Bra037626.1-P	Field mustard	peroxisome	70.67	67.95
TraesCS6B01G044000.1	Wheat	plasma membrane	65.71	67.78
EES06135	Sorghum	golgi, peroxisome, plasma membrane	68.0	67.74
EES04351	Sorghum	golgi, peroxisome, plasma membrane	68.0	67.74
PGSC0003DMT400031304	Potato	plasma membrane	68.38	67.74
Zm00001d054060_P001	Maize	plastid	67.43	67.56
TraesCS6A01G031200.1	Wheat	plasma membrane	65.33	67.39
Zm00001d054057_P001	Maize	extracellular	67.24	67.37
TraesCS6D01G035600.1	Wheat	plasma membrane	65.14	67.19
Os02t0112600-01	Rice	golgi, plasma membrane, plastid	68.19	67.17
Os02t0112100-01	Rice	golgi, plasma membrane, plastid	68.19	67.17
TraesCS6A01G032400.1	Wheat	plastid	64.95	67.13
HORVU6Hr1G005780.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	58.86	67.03
TraesCS6A01G032500.1	Wheat	plastid	64.76	66.93
CDY31024	Canola	endoplasmic reticulum, plasma membrane	19.62	66.88
TraesCS6D01G037800.1	Wheat	plasma membrane	64.57	66.86
TraesCS6D01G037200.1	Wheat	golgi, plasma membrane, plastid	64.57	66.73
TraesCS6B01G045600.1	Wheat	golgi, plasma membrane, vacuole	64.57	66.73
TraesCS6B01G046500.1	Wheat	plasma membrane	64.38	66.67
TraesCS6B01G045700.1	Wheat	plastid	64.19	66.6
KRH25078	Soybean	peroxisome, plasma membrane, plastid, vacuole	56.57	66.59
TraesCS6D01G037300.1	Wheat	golgi, plasma membrane, plastid	64.38	66.54
TraesCS6B01G046700.1	Wheat	plasma membrane	64.19	66.34
Bra038301.1-P	Field mustard	golgi, peroxisome, plasma membrane	68.57	66.3
TraesCS6D01G037900.1	Wheat	plasma membrane	64.19	66.21
GSMUA_Achr11P...	Banana	cytosol	60.76	66.18
HORVU6Hr1G005930.1	Barley	plasma membrane	64.0	66.14
TraesCS6D01G038200.1	Wheat	plasma membrane	64.0	66.14
TraesCS6A01G032800.1	Wheat	plasma membrane	63.81	66.08
TraesCS6A01G033000.1	Wheat	plasma membrane	64.0	66.01
TraesCS6D01G038100.1	Wheat	golgi, plasma membrane, vacuole	64.0	66.01
TraesCS6D01G038300.1	Wheat	plasma membrane	63.81	65.94
TraesCS6A01G033200.1	Wheat	plasma membrane	63.81	65.94
TraesCS6A01G033100.1	Wheat	plasma membrane	63.81	65.94
TraesCS6B01G046600.1	Wheat	plasma membrane	63.81	65.82
HORVU6Hr1G005720.1	Barley	extracellular	47.43	65.7
HORVU6Hr1G005600.2	Barley	endoplasmic reticulum	63.62	65.62
HORVU6Hr1G005770.1	Barley	plasma membrane	63.62	65.62
HORVU6Hr1G005580.1	Barley	plastid	68.0	65.5
TraesCS6A01G032900.1	Wheat	golgi, plasma membrane, vacuole	63.43	65.42
TraesCS6B01G044500.1	Wheat	plastid	59.62	64.54
TraesCS6D01G038000.1	Wheat	plasma membrane	61.9	64.1
Zm00001d014976_P001	Maize	plasma membrane	63.43	63.79
TraesCS6B01G044400.1	Wheat	plastid	68.38	63.54
EES04350	Sorghum	plastid	63.81	62.62
TraesCS2A01G074800.1	Wheat	plasma membrane	59.62	62.35
TraesCS2D01G073500.1	Wheat	plasma membrane	59.05	62.12
CDY53125	Canola	plastid	21.14	60.33
PGSC0003DMT400043794	Potato	plasma membrane	53.33	56.0
CDY31023	Canola	endoplasmic reticulum, extracellular	8.57	53.57
PGSC0003DMT400017804	Potato	plasma membrane	40.95	50.71
CDX99169	Canola	cytosol	6.86	48.0
AT4G14358.1	Thale cress	cytosol	6.67	40.23

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:102581584	MapMan:24.2.2.10	MapMan:25.1.3.1	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR020846	UniProt:M1BQM6
InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF07690	EnsemblPlantsGene:PGSC0003DMG400019674	PGSC:PGSC0003DMG400019674
EnsemblPlants:PGSC0003DMT400050654	PFscan:PS50850	PANTHER:PTHR23515	PANTHER:PTHR23515:SF3	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI000296CDF0	RefSeq:XP_006340412.1	SEG:seg	:	:	:

Description

High-affinity nitrate transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400019674]

Coordinates

chr11:-:41938022..41939905

Molecular Weight (calculated)

57452.8 Da

IEP (calculated)

8.899

GRAVY (calculated)

0.363

Length

525 amino acids

Sequence
(BLAST)

001: MASFESPLGR EQAFAFSVTS QNVCNNSQSN KFDLPVDSEH KAKSIKIFSF AQPHMRSFHL AWISFFTCFI STFAAAPLVP IIRDNLNLTR ADIGNAGVAS
101: VSGSIFSRLV MGALCDLIGP RYGCAFLNLL TAPIVFSVAF ISNAEGYIAM RFLVGFSLAT FVSCQYWTSV MFNSQIIGLV NGVAGGWGDM GGGVTQLLMP
201: FLFHIIKLTG ATPFTAWRIA FFIPGWLHII IGLMVLILGQ DLPDGNLSAL QKKGDVTKDQ FSKVLRNAVT NYRTWVFFLL YGFSMGVELC INNVIAEYFY
301: DKFNLKLHTA GMIAATFGMA NFVARPFGGY ASDLAARKFG MRGRLWVLWI VQTTGGAFCI WLGRAESLPI AIVSMILFSI GAQAACGATY GIIPFVSRRS
401: LGLISGLTGA GGNFGGGLTQ LLFFSTTRFS TGMGLTWMGL MAIACTLPVA FIHFPQWGSM FFPASNDGKY NEENYYESEW TENEKQKGLH LASVKFAENS
501: RSERGKKQIV TFIDTSTHSS SPDHV

Best Arabidopsis Sequence Match ( AT5G60770.1 )
(BLAST)

001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV

Arabidopsis Description

NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.