Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G033000.1 | Wheat | plasma membrane | 97.05 | 97.05 |
| TraesCS6D01G038100.1 | Wheat | golgi, plasma membrane, vacuole | 95.87 | 95.87 |
| TraesCS6B01G046700.1 | Wheat | plasma membrane | 93.32 | 93.5 |
| TraesCS6B01G046500.1 | Wheat | plasma membrane | 91.55 | 91.91 |
| TraesCS6B01G045700.1 | Wheat | plastid | 89.78 | 90.32 |
| TraesCS6B01G045600.1 | Wheat | golgi, plasma membrane, vacuole | 89.78 | 89.96 |
| TraesCS6B01G044100.1 | Wheat | plastid | 81.34 | 81.66 |
| TraesCS6B01G044300.1 | Wheat | plasma membrane | 81.34 | 81.66 |
| TraesCS6B01G044200.1 | Wheat | plasma membrane | 81.14 | 81.46 |
| TraesCS6B01G044000.1 | Wheat | plasma membrane | 80.16 | 80.16 |
| TraesCS6B01G044500.1 | Wheat | plastid | 71.51 | 75.05 |
| Zm00001d054057_P001 | Maize | extracellular | 76.03 | 73.86 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 77.21 | 73.73 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 77.21 | 73.73 |
| Zm00001d054060_P001 | Maize | plastid | 75.83 | 73.66 |
| TraesCS6B01G044400.1 | Wheat | plastid | 81.73 | 73.63 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 75.44 | 72.87 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 75.44 | 72.87 |
| Zm00001d014976_P001 | Maize | plasma membrane | 73.48 | 71.65 |
| EES04350 | Sorghum | plastid | 75.05 | 71.4 |
| PGSC0003DMT400050658 | Potato | plasma membrane | 58.15 | 68.2 |
| KRH30604 | Soybean | peroxisome | 70.33 | 67.55 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 66.4 | 67.33 |
| KRH22855 | Soybean | peroxisome | 69.94 | 67.17 |
| KRH26509 | Soybean | peroxisome | 69.74 | 66.98 |
| VIT_08s0040g01500.t01 | Wine grape | golgi, peroxisome, plasma membrane, plastid | 69.35 | 66.48 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 68.37 | 65.66 |
| GSMUA_Achr11P... | Banana | cytosol | 62.08 | 65.56 |
| PGSC0003DMT400031306 | Potato | plasma membrane | 44.99 | 64.87 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 63.46 | 64.86 |
| PGSC0003DMT400092589 | Potato | plasma membrane | 67.78 | 64.61 |
| CDY06298 | Canola | golgi, peroxisome, plasma membrane | 53.24 | 64.37 |
| Bra034142.1-P | Field mustard | plasma membrane | 19.45 | 64.29 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 31.43 | 64.26 |
| PGSC0003DMT400002924 | Potato | plasma membrane | 66.8 | 64.15 |
| AT5G60770.1 | Thale cress | plasma membrane | 66.4 | 64.14 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 65.82 | 63.81 |
| CDY32821 | Canola | cytosol, peroxisome, plasma membrane | 58.15 | 63.79 |
| PGSC0003DMT400031304 | Potato | plasma membrane | 66.4 | 63.77 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 19.25 | 63.64 |
| CDY68730 | Canola | endoplasmic reticulum, plasma membrane | 49.12 | 63.61 |
| Bra030713.1-P | Field mustard | golgi, peroxisome, plasma membrane | 66.21 | 63.58 |
| Bra002453.1-P | Field mustard | golgi, peroxisome, plasma membrane, plastid | 65.82 | 63.57 |
| CDY72274 | Canola | plasma membrane | 44.01 | 63.46 |
| Solyc11g069750.1.1 | Tomato | extracellular | 65.42 | 63.43 |
| Bra031610.1-P | Field mustard | golgi, peroxisome, plasma membrane | 65.82 | 63.33 |
| CDY22704 | Canola | cytosol, peroxisome, plasma membrane | 57.56 | 63.28 |
| CDY70994 | Canola | golgi, plasma membrane | 43.81 | 63.17 |
| CDY22703 | Canola | golgi, peroxisome, plasma membrane | 62.28 | 63.15 |
| CDX93592 | Canola | golgi, peroxisome, plasma membrane | 56.97 | 63.04 |
| Bra018656.1-P | Field mustard | golgi, peroxisome, plasma membrane | 60.31 | 63.04 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 55.21 | 63.0 |
| CDX93591 | Canola | golgi, peroxisome, plasma membrane | 57.37 | 62.93 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 22.59 | 62.84 |
| AT1G08090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 65.42 | 62.83 |
| CDY06299 | Canola | golgi, peroxisome, plasma membrane | 62.08 | 62.45 |
| Bra031611.1-P | Field mustard | golgi, peroxisome, plasma membrane | 62.08 | 62.45 |
| Bra038302.1-P | Field mustard | peroxisome | 65.42 | 61.9 |
| Bra018655.1-P | Field mustard | golgi, peroxisome, plasma membrane | 60.9 | 61.88 |
| AT3G45060.1 | Thale cress | peroxisome | 65.82 | 61.81 |
| AT5G60780.1 | Thale cress | peroxisome | 65.42 | 61.78 |
| Bra037625.1-P | Field mustard | peroxisome | 65.42 | 61.55 |
| PGSC0003DMT400040689 | Potato | plasma membrane | 62.87 | 61.07 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 64.24 | 61.01 |
| Bra037626.1-P | Field mustard | peroxisome | 65.42 | 60.99 |
| CDY50324 | Canola | plasma membrane | 57.17 | 60.62 |
| CDY69111 | Canola | peroxisome | 56.97 | 60.42 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 64.44 | 60.41 |
| Bra020230.1-P | Field mustard | peroxisome | 57.76 | 60.25 |
| AT1G08100.1 | Thale cress | cytosol, peroxisome, plasma membrane | 61.49 | 59.96 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 61.1 | 59.13 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 9.63 | 58.33 |
| CDY26984 | Canola | plasma membrane | 51.08 | 57.02 |
| CDY53125 | Canola | plastid | 19.84 | 54.89 |
| CDX99169 | Canola | cytosol | 8.06 | 54.67 |
| TraesCS3B01G285900.1 | Wheat | plasma membrane | 53.63 | 53.11 |
| AT4G14358.1 | Thale cress | cytosol | 7.07 | 41.38 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 38.11 | 37.52 |
| TraesCS7B01G328700.1 | Wheat | golgi, peroxisome, plasma membrane | 35.76 | 37.45 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G046600.1 | EnsemblPlantsGene:TraesCS6B01G046600 | Gene3D:1.20.1250.20 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom |
| InterPro:MFS_trans_sf | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | PFAM:PF07690 | SEG:seg | SUPFAM:SSF103473 |
| TIGR:cd06174 | TMHMM:TMhelix | MapMan:24.2.2.10 | MapMan:25.1.3.1 | : | : |
Description
No Description!
Coordinates
chr6B:-:27778250..27779779
Molecular Weight (calculated)
54556.8 Da
IEP (calculated)
7.788
GRAVY (calculated)
0.430
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMEVGSPAA TTAAPINFSL PVDSEHKAKS IKIFSFGNPH MRAFHLGWMS FFTCVVSTFA AAPLIPIIRD NLNLTKADIG NAGVASVSGA IFSRLAMGAI
101: CDLLGPRYGC AFLVMLSAPA VFCMSVIDGP GGYITIRFLI GVSLATFVSC QYWISTMFNS KIIGTVGGLT AGWGDMGGGA TQLIMPLVFD GILACGATPF
201: TAWRLAYFVP GMMLVVMGLL VLTLGQDLPD GNLRSLQKNG DMNKDKFTKV LQGAVTNYRT WIFVFIYGYC MGVELTTNNV IAEYYYDSFH LDLRAAGTIA
301: ASFGLANIFA RPMGGYLSDL GARYFGMRAR LWNIWILQTA GGVFCICLGR ASSLPTSVTC MVLYSICVEA ACGAVYGVIP FVSRRSLGLI SGMSGAGGNV
401: GGGLTQFLFF TSSQYTTGKG LQYMGIMIMV CTLPIALVHF PQWGSMLLPP SADATEEDYY SAEWTEEEKS KGLHLGGLKF AENSVSERGK RNAILAVPSS
501: PPNNTPQHV
101: CDLLGPRYGC AFLVMLSAPA VFCMSVIDGP GGYITIRFLI GVSLATFVSC QYWISTMFNS KIIGTVGGLT AGWGDMGGGA TQLIMPLVFD GILACGATPF
201: TAWRLAYFVP GMMLVVMGLL VLTLGQDLPD GNLRSLQKNG DMNKDKFTKV LQGAVTNYRT WIFVFIYGYC MGVELTTNNV IAEYYYDSFH LDLRAAGTIA
301: ASFGLANIFA RPMGGYLSDL GARYFGMRAR LWNIWILQTA GGVFCICLGR ASSLPTSVTC MVLYSICVEA ACGAVYGVIP FVSRRSLGLI SGMSGAGGNV
401: GGGLTQFLFF TSSQYTTGKG LQYMGIMIMV CTLPIALVHF PQWGSMLLPP SADATEEDYY SAEWTEEEKS KGLHLGGLKF AENSVSERGK RNAILAVPSS
501: PPNNTPQHV
001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
Arabidopsis Description
NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.