Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G038200.1 | Wheat | plasma membrane | 98.62 | 98.62 |
| TraesCS6D01G038300.1 | Wheat | plasma membrane | 98.43 | 98.43 |
| HORVU6Hr1G005930.1 | Barley | plasma membrane | 97.83 | 97.83 |
| TraesCS6B01G046700.1 | Wheat | plasma membrane | 97.83 | 97.83 |
| TraesCS6A01G033200.1 | Wheat | plasma membrane | 96.85 | 96.85 |
| TraesCS6A01G032800.1 | Wheat | plasma membrane | 92.72 | 92.9 |
| TraesCS6A01G033000.1 | Wheat | plasma membrane | 92.52 | 92.34 |
| TraesCS6A01G032900.1 | Wheat | golgi, plasma membrane, vacuole | 91.93 | 91.75 |
| TraesCS6A01G032400.1 | Wheat | plastid | 90.16 | 90.16 |
| TraesCS6A01G032500.1 | Wheat | plastid | 89.17 | 89.17 |
| TraesCS6A01G031100.1 | Wheat | plastid | 81.69 | 81.85 |
| TraesCS6A01G030700.1 | Wheat | plastid | 81.69 | 81.85 |
| TraesCS6A01G031000.1 | Wheat | plasma membrane | 81.3 | 81.46 |
| TraesCS6A01G030800.1 | Wheat | plasma membrane | 81.3 | 81.46 |
| TraesCS6A01G030900.1 | Wheat | plasma membrane | 81.1 | 81.26 |
| TraesCS6A01G031200.1 | Wheat | plasma membrane | 80.91 | 80.75 |
| Zm00001d054057_P001 | Maize | extracellular | 75.98 | 73.66 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 77.17 | 73.55 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 77.17 | 73.55 |
| Zm00001d054060_P001 | Maize | plastid | 75.79 | 73.47 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 75.59 | 72.87 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 75.59 | 72.87 |
| Zm00001d014976_P001 | Maize | plasma membrane | 73.23 | 71.26 |
| EES04350 | Sorghum | plastid | 75.0 | 71.22 |
| TraesCS2A01G074800.1 | Wheat | plasma membrane | 69.49 | 70.32 |
| PGSC0003DMT400050658 | Potato | plasma membrane | 58.86 | 68.89 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 65.94 | 66.73 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 23.82 | 66.12 |
| KRH30604 | Soybean | peroxisome | 68.5 | 65.66 |
| KRH26509 | Soybean | peroxisome | 68.5 | 65.66 |
| KRH22855 | Soybean | peroxisome | 68.31 | 65.47 |
| GSMUA_Achr11P... | Banana | cytosol | 62.01 | 65.35 |
| VIT_08s0040g01500.t01 | Wine grape | golgi, peroxisome, plasma membrane, plastid | 68.11 | 65.16 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 63.58 | 64.86 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 66.93 | 64.15 |
| PGSC0003DMT400002924 | Potato | plasma membrane | 66.93 | 64.15 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 65.94 | 63.81 |
| PGSC0003DMT400031306 | Potato | plasma membrane | 44.29 | 63.74 |
| PGSC0003DMT400092589 | Potato | plasma membrane | 66.93 | 63.67 |
| CDY06298 | Canola | golgi, peroxisome, plasma membrane | 52.76 | 63.66 |
| Bra034142.1-P | Field mustard | plasma membrane | 19.29 | 63.64 |
| AT5G60770.1 | Thale cress | plasma membrane | 65.75 | 63.38 |
| Solyc11g069750.1.1 | Tomato | extracellular | 65.35 | 63.24 |
| CDY32821 | Canola | cytosol, peroxisome, plasma membrane | 57.68 | 63.15 |
| PGSC0003DMT400031304 | Potato | plasma membrane | 65.35 | 62.64 |
| CDY68730 | Canola | endoplasmic reticulum, plasma membrane | 48.43 | 62.6 |
| Bra030713.1-P | Field mustard | golgi, peroxisome, plasma membrane | 65.16 | 62.45 |
| Bra002453.1-P | Field mustard | golgi, peroxisome, plasma membrane, plastid | 64.76 | 62.43 |
| Bra031610.1-P | Field mustard | golgi, peroxisome, plasma membrane | 64.96 | 62.38 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 18.9 | 62.34 |
| CDX93591 | Canola | golgi, peroxisome, plasma membrane | 56.89 | 62.28 |
| CDY22704 | Canola | cytosol, peroxisome, plasma membrane | 56.69 | 62.2 |
| CDX93592 | Canola | golgi, peroxisome, plasma membrane | 56.3 | 62.17 |
| CDY72274 | Canola | plasma membrane | 43.11 | 62.04 |
| CDY70994 | Canola | golgi, plasma membrane | 43.11 | 62.04 |
| Bra018656.1-P | Field mustard | golgi, peroxisome, plasma membrane | 59.45 | 62.01 |
| AT1G08090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 64.37 | 61.7 |
| CDY06299 | Canola | golgi, peroxisome, plasma membrane | 61.42 | 61.66 |
| Bra031611.1-P | Field mustard | golgi, peroxisome, plasma membrane | 61.42 | 61.66 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 54.13 | 61.66 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 30.12 | 61.45 |
| CDY22703 | Canola | golgi, peroxisome, plasma membrane | 60.63 | 61.35 |
| PGSC0003DMT400040689 | Potato | plasma membrane | 62.99 | 61.07 |
| Bra018655.1-P | Field mustard | golgi, peroxisome, plasma membrane | 60.04 | 60.88 |
| AT5G60780.1 | Thale cress | peroxisome | 64.57 | 60.85 |
| Bra038302.1-P | Field mustard | peroxisome | 64.37 | 60.78 |
| AT3G45060.1 | Thale cress | peroxisome | 64.57 | 60.52 |
| Bra037625.1-P | Field mustard | peroxisome | 64.37 | 60.44 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 63.19 | 59.89 |
| Bra037626.1-P | Field mustard | peroxisome | 64.17 | 59.71 |
| CDY69111 | Canola | peroxisome | 56.3 | 59.58 |
| CDY50324 | Canola | plasma membrane | 56.1 | 59.38 |
| Bra020230.1-P | Field mustard | peroxisome | 56.69 | 59.02 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 62.8 | 58.75 |
| AT1G08100.1 | Thale cress | cytosol, peroxisome, plasma membrane | 60.24 | 58.62 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 60.24 | 58.17 |
| CDY26984 | Canola | plasma membrane | 50.2 | 55.92 |
| CDY53125 | Canola | plastid | 19.09 | 52.72 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 8.66 | 52.38 |
| TraesCS3A01G254000.1 | Wheat | plasma membrane | 52.95 | 52.33 |
| CDX99169 | Canola | cytosol | 7.28 | 49.33 |
| AT4G14358.1 | Thale cress | cytosol | 6.89 | 40.23 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 38.58 | 37.91 |
| TraesCS7A01G428500.1 | Wheat | golgi, peroxisome, plasma membrane | 31.89 | 34.62 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G033100.1 | EnsemblPlantsGene:TraesCS6A01G033100 | Gene3D:1.20.1250.20 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom |
| InterPro:MFS_trans_sf | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | PFAM:PF07690 | SEG:seg | SUPFAM:SSF103473 |
| TIGR:cd06174 | TMHMM:TMhelix | MapMan:24.2.2.10 | MapMan:25.1.3.1 | : | : |
Description
No Description!
Coordinates
chr6A:-:16399171..16400697
Molecular Weight (calculated)
54553.9 Da
IEP (calculated)
7.768
GRAVY (calculated)
0.443
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMEVASTPT TPAPINFLLP VDSEHKAKSI KIFSFGNPHM RAFHLGWMSF FTCVVSTFAA APLIPIIRDN LNLTKADIGN AGVASVSGAI FSRLAMGAIC
101: DLLGPRYGCA FLVMLSAPAV FCMSIIDGPG GYITIRFLIG VSLATFVSCQ YWVSTMFNSK IIGTVGGLTA GWGDMGGGAT QLIMPLVFDA ILACGATPFT
201: AWRLAYFVPG MMLVVMGLLV LTMGQDLPDG NLRSLQKNGD MNKDKFSNVL RGAVTNYRTW IFVFIYGYCM GVELTTNNVI AEYYYDSFHL DLRAAGTIAA
301: CFGLANVFAR PMGGYLSDLG ARYFGMRARL WNIWILQTAG GAFCLCLGSA TTLPTSITCM VLYSICVEAA CGAVYGVIPF VSRRSLGLIS GMSGAGGNVG
401: GGLTQFLFFT SSQYSTGKGL QYMGIMVMAC TLPVALVHFP QWGSMLLPPT TGATEEEYYA AEWTEEEKSK GLHNAGIKFA ENSVSERGRR NTILAVPATP
501: PHVTPQHV
101: DLLGPRYGCA FLVMLSAPAV FCMSIIDGPG GYITIRFLIG VSLATFVSCQ YWVSTMFNSK IIGTVGGLTA GWGDMGGGAT QLIMPLVFDA ILACGATPFT
201: AWRLAYFVPG MMLVVMGLLV LTMGQDLPDG NLRSLQKNGD MNKDKFSNVL RGAVTNYRTW IFVFIYGYCM GVELTTNNVI AEYYYDSFHL DLRAAGTIAA
301: CFGLANVFAR PMGGYLSDLG ARYFGMRARL WNIWILQTAG GAFCLCLGSA TTLPTSITCM VLYSICVEAA CGAVYGVIPF VSRRSLGLIS GMSGAGGNVG
401: GGLTQFLFFT SSQYSTGKGL QYMGIMVMAC TLPVALVHFP QWGSMLLPPT TGATEEEYYA AEWTEEEKSK GLHNAGIKFA ENSVSERGRR NTILAVPATP
501: PHVTPQHV
001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
Arabidopsis Description
NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.