Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 99.38 | 99.07 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 97.19 | 98.11 |
| Zm00001d034365_P001 | Maize | plasma membrane | 86.25 | 90.2 |
| EER93336 | Sorghum | cytosol | 86.25 | 89.9 |
| Os03t0787000-01 | Rice | plasma membrane | 85.62 | 83.03 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 64.06 | 80.39 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 64.38 | 75.18 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 70.0 | 72.03 |
| Zm00001d013115_P001 | Maize | cytosol | 31.25 | 68.49 |
| PGSC0003DMT400072325 | Potato | cytosol | 57.5 | 60.93 |
| Solyc10g081850.1.1 | Tomato | cytosol | 57.5 | 60.73 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 55.31 | 60.62 |
| Solyc01g006950.2.1 | Tomato | nucleus | 55.94 | 59.67 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 60.31 | 59.57 |
| PGSC0003DMT400054965 | Potato | cytosol | 55.31 | 59.0 |
| KRH32862 | Soybean | cytosol | 55.62 | 58.17 |
| KRH72168 | Soybean | cytosol | 54.69 | 57.38 |
| CDY70958 | Canola | cytosol | 58.44 | 56.16 |
| Bra001422.1-P | Field mustard | cytosol | 58.44 | 56.16 |
| CDX73851 | Canola | cytosol | 58.44 | 55.99 |
| KRH72169 | Soybean | cytosol | 57.5 | 54.93 |
| KRH32861 | Soybean | mitochondrion | 56.88 | 54.82 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 51.88 | 54.43 |
| CDY01061 | Canola | cytosol, plastid | 56.25 | 53.73 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 57.81 | 53.47 |
| CDY08492 | Canola | cytosol | 55.94 | 52.8 |
| KRH68016 | Soybean | cytosol | 48.12 | 52.38 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 53.12 | 52.31 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 48.12 | 51.16 |
| TraesCS4B01G067100.1 | Wheat | cytosol | 25.62 | 50.31 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 47.19 | 49.35 |
| AT3G52400.1 | Thale cress | cytosol | 51.88 | 48.68 |
| Bra033436.1-P | Field mustard | cytosol | 50.62 | 47.37 |
| CDY23212 | Canola | cytosol | 50.62 | 47.23 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 45.31 | 47.08 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 48.75 | 46.71 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 48.75 | 46.43 |
| TraesCS5B01G102700.1 | Wheat | cytosol | 41.56 | 43.46 |
| TraesCS2B01G263700.1 | Wheat | cytosol | 40.62 | 43.05 |
| TraesCS7B01G394300.1 | Wheat | cytosol | 40.62 | 42.76 |
| TraesCS2B01G244700.1 | Wheat | cytosol | 39.69 | 41.91 |
| TraesCS4B01G067200.1 | Wheat | cytosol | 40.62 | 41.4 |
| TraesCS5B01G034800.1 | Wheat | cytosol | 38.75 | 40.92 |
| TraesCS5B01G035600.1 | Wheat | cytosol | 39.06 | 40.45 |
| CDX95336 | Canola | cytosol | 11.25 | 34.29 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 23.44 | 24.51 |
| TraesCS2B01G238200.2 | Wheat | cytosol | 21.88 | 22.73 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCS5B01G427600 | EnsemblPlants:TraesCS5B01G427600.1 | TIGR:cd00179 | TIGR:cd15848 | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:603830833..603831795
Molecular Weight (calculated)
34650.0 Da
IEP (calculated)
8.246
GRAVY (calculated)
-0.419
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNLFSSSWK RAGAGGDGGD LESGGGGGVE MTAPPGAAAG ASLDRFFEDV ESIKDDLREL ERIQRSLHDG NESGKSLHDA SAVRALRSRM DADVAAAIKK
101: AKVVKLRLES LDRANAANRS VAGCGPGSST DRTRTSVVAG LRKKLRDAME SFSSLRSRIT SEYRDTVARR YFTVTGAQPD EATLDTLAET GEGERFLQRA
201: IAEQQGRGEV LGVVAEIQER HGAVADLERS LLELQQVFND MAVLVAAQGE QLDDIEGHVG RARSFVDRGR EQLQVARKHQ KSSRKWTCIG IGILLVVILI
301: IVIPIVLKNT NKSNNNNNQQ
101: AKVVKLRLES LDRANAANRS VAGCGPGSST DRTRTSVVAG LRKKLRDAME SFSSLRSRIT SEYRDTVARR YFTVTGAQPD EATLDTLAET GEGERFLQRA
201: IAEQQGRGEV LGVVAEIQER HGAVADLERS LLELQQVFND MAVLVAAQGE QLDDIEGHVG RARSFVDRGR EQLQVARKHQ KSSRKWTCIG IGILLVVILI
301: IVIPIVLKNT NKSNNNNNQQ
001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
Arabidopsis Description
SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.