Factsheet for Bra001422.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000090.1-P
Bra000600.1-P
Bra000964.1-P
Bra001009.1-P
Bra001127.1-P
Bra001306.1-P
Bra001548.1-P
Bra002867.1-P
Bra002880.1-P
Bra005749.1-P
Bra006289.1-P
Bra008279.1-P
Bra008713.1-P
Bra009303.1-P
Bra009560.1-P
Bra009978.1-P
Bra009989.1-P
Bra010013.1-P
Bra010329.1-P
Bra010436.1-P
Bra010455.1-P
Bra010500.1-P
Bra010982.1-P
Bra011106.1-P
Bra011260.1-P
Bra011320.1-P
Bra011367.1-P	plasma membrane
Bra012490.1-P
Bra012620.1-P
Bra013774.1-P
Bra013905.1-P
Bra014333.1-P
Bra014967.1-P
Bra015345.1-P
Bra017103.1-P
Bra017204.1-P
Bra019148.1-P
Bra019993.1-P
Bra020601.1-P
Bra021744.1-P
Bra022866.1-P
Bra023104.1-P
Bra023227.1-P
Bra023511.1-P
Bra023964.1-P
Bra024012.1-P
Bra024145.1-P
Bra024215.1-P
Bra024481.1-P
Bra024770.1-P
Bra025862.1-P
Bra026272.1-P
Bra026324.1-P
Bra026455.1-P
Bra027160.1-P
Bra027174.1-P
Bra028325.1-P
Bra029771.1-P
Bra029785.1-P
Bra030588.1-P
Bra030798.1-P
Bra030816.1-P
Bra031096.1-P
Bra032493.1-P
Bra032828.1-P
Bra033205.1-P
Bra034070.1-P
Bra034085.1-P
Bra035518.1-P
Bra035582.1-P
Bra035594.1-P
Bra036111.1-P
Bra036117.1-P
Bra036125.1-P
Bra037049.1-P	plasma membrane
Bra037242.1-P
Bra038695.1-P
Bra039130.1-P
Bra039911.1-P
Bra040115.1-P
Bra040119.1-P
Bra040409.1-P
Bra040415.1-P
Bra040785.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11820.1	Bra015345.1-P	AT1G04750.1	24556609
AT3G11820.1	Bra030588.1-P	AT1G04750.1	24556609
AT3G11820.1	Bra032493.1-P	AT1G04750.1	24556609
AT3G11820.1	Bra019993.1-P	AT1G09770.1	24556609
AT3G11820.1	Bra027160.1-P	AT1G09770.1	24556609
AT3G11820.1	Bra030798.1-P	AT1G09770.1	24556609
AT3G11820.1	Bra025862.1-P	AT1G20970.1	24556609
AT3G11820.1	Bra010982.1-P	AT1G25260.1	24556609
AT3G11820.1	Bra012490.1-P	AT1G25260.1	24556609
AT3G11820.1	Bra024770.1-P	AT1G25260.1	24556609
AT3G11820.1	Bra032828.1-P	AT1G27400.1	24556609
AT3G11820.1	Bra023227.1-P	AT1G31970.1	24556609
AT3G11820.1	Bra035518.1-P	AT1G31970.1	24556609
AT3G11820.1	Bra030816.1-P	AT1G56110.1	24556609
AT3G11820.1	Bra040785.1-P	AT1G56110.1	24556609
AT3G11820.1	Bra008279.1-P	AT1G76810.1	24556609
AT3G11820.1	Bra024481.1-P	AT2G18020.1	24556609
AT3G11820.1	Bra037242.1-P	AT2G18020.1	24556609
AT3G11820.1	Bra039911.1-P	AT2G18020.1	24556609
AT3G11820.1	Bra031096.1-P	AT2G19750.1	24556609
AT3G11820.1	Bra021744.1-P	AT2G31800.1	24556609
AT3G11820.1	Bra022866.1-P	AT2G31800.1	24556609
AT3G11820.1	Bra017204.1-P	AT2G37190.1	24556609
AT3G11820.1	Bra023104.1-P	AT2G37190.1	24556609
AT3G11820.1	Bra000090.1-P	AT2G38750.1	24556609
AT3G11820.1	Bra017103.1-P	AT2G38750.1	24556609
AT3G11820.1	Bra001009.1-P	AT3G01290.1	24556609
AT3G11820.1	Bra039130.1-P	AT3G01290.1	24556609
AT3G11820.1	Bra010013.1-P	AT3G04470.1	24556609
AT3G11820.1	Bra036125.1-P	AT3G04470.1	24556609
AT3G11820.1	Bra001127.1-P	AT3G04840.1	24556609
AT3G11820.1	Bra026324.1-P	AT3G04840.1	24556609
AT3G11820.1	Bra040119.1-P	AT3G04840.1	24556609
AT3G11820.1	Bra040409.1-P	AT3G04840.1	24556609
AT3G11820.1	Bra040115.1-P	AT3G04920.1	24556609
AT3G11820.1	Bra040415.1-P	AT3G04920.1	24556609
AT3G11820.1	Bra001306.1-P	AT3G09500.1	24556609
AT3G11820.1	Bra029771.1-P	AT3G09500.1	24556609
AT3G11820.1	Bra034070.1-P	AT3G09500.1	24556609
AT3G11820.1	Bra014333.1-P	AT3G09740.1	24556609
AT3G11820.1	Bra029785.1-P	AT3G09740.1	24556609
AT3G11820.1	Bra034085.1-P	AT3G09740.1	24556609
AT3G11820.1	Bra038695.1-P	AT3G12030.1	24556609
AT3G11820.1	Bra027174.1-P	AT3G16310.1	21798944
AT3G11820.1	Bra014967.1-P	AT3G23620.1	24556609
AT3G11820.1	Bra028325.1-P	AT3G23620.1	24556609
AT3G11820.1	Bra000964.1-P	AT4G00670.1	24556609
AT3G11820.1	Bra012620.1-P	AT4G18060.1	24556609
AT3G11820.1	Bra010500.1-P	AT4G24190.1	24556609
AT3G11820.1	Bra013774.1-P	AT4G24190.1	24556609
AT3G11820.1	Bra010436.1-P	AT4G26230.1	24556609
AT3G11820.1	Bra026455.1-P	AT4G26230.1	24556609
AT3G11820.1	Bra024215.1-P	AT4G28250.1	24556609
AT3G11820.1	Bra026272.1-P	AT4G28250.1	24556609
AT3G11820.1	Bra001548.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra010329.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra011106.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra024145.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra033205.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra011260.1-P	AT4G31340.1	24556609
AT3G11820.1	Bra024012.1-P	AT4G31340.1	24556609
AT3G11820.1	Bra011320.1-P	AT4G32070.1	24556609
AT3G11820.1	Bra023964.1-P	AT4G32070.1	24556609
AT3G11820.1	Bra011367.1-P	AT4G32650.1	20735773
AT3G11820.1	Bra037049.1-P	AT4G32650.1	20735773
AT3G11820.1	Bra005749.1-P	AT5G02870.1	24556609
AT3G11820.1	Bra009560.1-P	AT5G02870.1	24556609
AT3G11820.1	Bra009303.1-P	AT5G06970.1	24556609
AT3G11820.1	Bra006289.1-P	AT5G15200.1	24556609
AT3G11820.1	Bra008713.1-P	AT5G15200.1	24556609
AT3G11820.1	Bra023511.1-P	AT5G15200.1	24556609
AT3G11820.1	Bra009978.1-P	AT5G27120.1	24556609
AT3G11820.1	Bra020601.1-P	AT5G27120.1	24556609
AT3G11820.1	Bra036111.1-P	AT5G27120.1	24556609
AT3G11820.1	Bra009989.1-P	AT5G28060.1	24556609
AT3G11820.1	Bra036117.1-P	AT5G28060.1	24556609
AT3G11820.1	Bra000600.1-P	AT5G49930.1	24556609
AT3G11820.1	Bra010455.1-P	AT5G52470.1	24556609
AT3G11820.1	Bra013905.1-P	AT5G52470.1	24556609
AT3G11820.1	Bra019148.1-P	AT5G52470.1	24556609
AT3G11820.1	Bra002880.1-P	AT5G55660.1	24556609
AT3G11820.1	Bra035582.1-P	AT5G55660.1	24556609
AT3G11820.1	Bra002867.1-P	AT5G55920.1	24556609
AT3G11820.1	Bra035594.1-P	AT5G55920.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73851	Canola	cytosol	100.0	99.7
CDY70958	Canola	cytosol	99.1	99.1
Bra034808.1-P	Field mustard	cytosol, nucleus, plastid	87.09	89.23
AT3G11820.1	Thale cress	cytosol, nucleus, plastid	90.99	87.57
KRH32861	Soybean	mitochondrion	72.07	72.29
Solyc01g006950.2.1	Tomato	nucleus	64.86	72.0
PGSC0003DMT400072325	Potato	cytosol	64.56	71.19
PGSC0003DMT400054965	Potato	cytosol	63.96	71.0
Solyc10g081850.1.1	Tomato	cytosol	64.56	70.96
KRH72169	Soybean	cytosol	71.17	70.75
VIT_08s0032g01150.t01	Wine grape	cytosol	67.57	69.44
Bra012806.1-P	Field mustard	cytosol, nucleus, peroxisome	62.16	67.21
GSMUA_Achr6P31140_001	Banana	cytosol	54.95	66.79
Bra033436.1-P	Field mustard	cytosol	68.47	66.67
Bra031761.1-P	Field mustard	cytosol	31.23	63.03
Bra031760.1-P	Field mustard	cytosol, nucleus, plasma membrane	19.22	61.54
EER93336	Sorghum	cytosol	56.46	61.24
Zm00001d034365_P001	Maize	plasma membrane	55.86	60.78
Bra031759.1-P	Field mustard	cytosol	54.05	60.4
Bra019872.1-P	Field mustard	cytosol	53.75	60.07
Bra016846.1-P	Field mustard	cytosol	53.45	59.73
TraesCS5A01G425600.1	Wheat	cytosol, nucleus, plastid	56.16	58.99
TraesCSU01G076400.1	Wheat	cytosol, golgi, nucleus	56.76	58.88
Os03t0787000-01	Rice	plasma membrane	58.26	58.79
TraesCS5B01G427600.1	Wheat	cytosol, golgi, nucleus	56.16	58.44
GSMUA_Achr8P03020_001	Banana	cytosol	54.35	58.2
Bra034202.1-P	Field mustard	cytosol	52.55	57.38
HORVU5Hr1G103590.1	Barley	cytosol, mitochondrion	40.84	53.33
Bra009318.1-P	Field mustard	cytosol	45.35	49.84
Bra005968.1-P	Field mustard	cytosol	45.35	49.67
Bra028672.1-P	Field mustard	cytosol	44.44	48.84
Zm00001d013115_P001	Maize	cytosol	19.82	45.21
Zm00001d013114_P001	Maize	cytosol, plastid	39.34	44.86
Bra031972.1-P	Field mustard	cytosol	37.24	44.29
Bra036431.1-P	Field mustard	cytosol	36.34	43.53
Bra018615.1-P	Field mustard	cytosol	39.34	42.67
Bra030733.1-P	Field mustard	cytosol	38.74	42.43
Bra039622.1-P	Field mustard	cytosol	30.93	35.76
Bra024476.1-P	Field mustard	cytosol	30.03	34.97
HORVU5Hr1G103620.1	Barley	cytosol	15.62	33.55

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	EnsemblPlantsGene:Bra001422	EnsemblPlants:Bra001422.1	EnsemblPlants:Bra001422.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727
UniProt:M4CB43	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF69	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000254072A	SEG:seg	:

Description

AT3G11820 (E=9e-135) SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1, PEN1 | SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchor

Coordinates

chrA03:-:16299966..16301512

Molecular Weight (calculated)

36800.7 Da

IEP (calculated)

9.665

GRAVY (calculated)

-0.572

Length

333 amino acids

Sequence
(BLAST)

001: MNDLFSSSFS RFRSSSGDNG GGGGGVQMTH PAGVNLDKFF EDVESVKEEL KELDRLNDTL RSSHEHSKTL HNAEAVKDLR SKMDADVGVA LKKAKMIKVK
101: LEALDRSNAA NRSLPGCGPG SSSDRTRTSV LNGLRKKLKD SMDSFNRLRE LISSEYRDTV QRRYFTVTGE NPDERTLDRL ISTGESERFL QKAIQEQGRG
201: RVLDTINEIQ ERHDAVKDIE KNLRELHQVF LDMAVLVEHQ GAQLDDIESH VGRASSFIRG GTEQLQTARV YQKNTRKWTC IAILILIIII VVVVLAVVKP
301: WNNGGGGGGG GGQPTSGQGS PPNPPQARRL LLR

Best Arabidopsis Sequence Match ( AT3G11820.1 )
(BLAST)

001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR

Arabidopsis Description

SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.