Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001422.1-P | Field mustard | cytosol | 99.7 | 100.0 |
| CDY70958 | Canola | cytosol | 99.1 | 99.4 |
| CDY01061 | Canola | cytosol, plastid | 91.02 | 90.75 |
| CDY08492 | Canola | cytosol | 91.02 | 89.68 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 91.02 | 87.86 |
| KRH32861 | Soybean | mitochondrion | 71.86 | 72.29 |
| Solyc01g006950.2.1 | Tomato | nucleus | 64.67 | 72.0 |
| PGSC0003DMT400072325 | Potato | cytosol | 64.37 | 71.19 |
| PGSC0003DMT400054965 | Potato | cytosol | 63.77 | 71.0 |
| Solyc10g081850.1.1 | Tomato | cytosol | 64.37 | 70.96 |
| KRH72169 | Soybean | cytosol | 70.96 | 70.75 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 67.37 | 69.44 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 54.79 | 66.79 |
| CDY23212 | Canola | cytosol | 68.26 | 66.47 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 64.97 | 64.97 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 65.27 | 64.88 |
| CDX95336 | Canola | cytosol | 19.76 | 62.86 |
| EER93336 | Sorghum | cytosol | 56.29 | 61.24 |
| Zm00001d034365_P001 | Maize | plasma membrane | 55.69 | 60.78 |
| CDY34843 | Canola | cytosol | 54.19 | 60.74 |
| CDY20986 | Canola | cytosol | 53.89 | 60.4 |
| CDY34656 | Canola | cytosol | 53.89 | 60.4 |
| CDX97943 | Canola | cytosol | 53.59 | 60.07 |
| CDY70107 | Canola | cytosol | 53.59 | 60.07 |
| CDY19350 | Canola | cytosol | 53.29 | 59.73 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 55.99 | 58.99 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 56.59 | 58.88 |
| Os03t0787000-01 | Rice | plasma membrane | 58.08 | 58.79 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 55.99 | 58.44 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 54.19 | 58.2 |
| CDY21160 | Canola | cytosol | 22.75 | 57.14 |
| CDY21958 | Canola | cytosol | 52.1 | 57.05 |
| CDY48554 | Canola | cytosol | 51.8 | 56.72 |
| CDY51747 | Canola | cytosol | 22.16 | 54.81 |
| CDY50666 | Canola | cytosol | 21.86 | 54.07 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 40.72 | 53.33 |
| Zm00001d013115_P001 | Maize | cytosol | 19.76 | 45.21 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 39.22 | 44.86 |
| CDY29963 | Canola | cytosol | 41.62 | 44.84 |
| CDX97497 | Canola | cytosol | 39.22 | 43.23 |
| CDX93553 | Canola | cytosol | 39.52 | 43.0 |
| CDX95050 | Canola | cytosol | 39.22 | 42.67 |
| CDY31137 | Canola | cytosol | 38.62 | 42.43 |
| CDY25157 | Canola | cytosol | 23.35 | 38.61 |
| CDY51748 | Canola | cytosol | 20.06 | 37.85 |
| CDY50665 | Canola | cytosol | 19.16 | 36.78 |
| CDY46302 | Canola | cytosol | 30.84 | 35.76 |
| CDY21161 | Canola | cytosol | 18.86 | 35.2 |
| CDY20921 | Canola | cytosol | 29.94 | 34.97 |
| CDY29223 | Canola | cytosol | 29.94 | 34.84 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 15.57 | 33.55 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:A0A078C9U0 | EnsemblPlants:CDX73851 | ProteinID:CDX73851 |
| ProteinID:CDX73851.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00111556001 | InterPro:IPR000727 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0004EEDA92 | SEG:seg | : | : | : |
Description
BnaA03g31960D
Coordinates
chrLK031800:+:224021..225987
Molecular Weight (calculated)
36857.8 Da
IEP (calculated)
9.665
GRAVY (calculated)
-0.572
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSFS RFRSSSGDNG GGGGGVQMTH PAGVNLDKFF EDVESVKEEL KELDRLNDTL RSSHEHSKTL HNAEAVKDLR SKMDADVGVA LKKAKMIKVK
101: LEALDRSNAA NRSLPGCGPG SSSDRTRTSV LNGLRKKLKD SMDSFNRLRE LISSEYRDTV QRRYFTVTGE NPDERTLDRL ISTGESERFL QKAIQEQGRG
201: RVLDTINEIQ ERHDAVKDIE KNLRELHQVF LDMAVLVEHQ GAQLDDIESH VGRASSFIRG GTEQLQTARV YQKNTRKWTC IAILILIIII VVVVLAVVKP
301: WNNGGGGGGG GGGQPTSGQG SPPNPPQARR LLLR
101: LEALDRSNAA NRSLPGCGPG SSSDRTRTSV LNGLRKKLKD SMDSFNRLRE LISSEYRDTV QRRYFTVTGE NPDERTLDRL ISTGESERFL QKAIQEQGRG
201: RVLDTINEIQ ERHDAVKDIE KNLRELHQVF LDMAVLVEHQ GAQLDDIESH VGRASSFIRG GTEQLQTARV YQKNTRKWTC IAILILIIII VVVVLAVVKP
301: WNNGGGGGGG GGGQPTSGQG SPPNPPQARR LLLR
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.