CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34843	Canola	cytosol	98.99	98.99
CDY20986	Canola	cytosol	98.32	98.32
Bra031761.1-P	Field mustard	cytosol	54.36	98.18
CDY70107	Canola	cytosol	97.32	97.32
CDY19350	Canola	cytosol	96.31	96.31
CDX97943	Canola	cytosol	95.97	95.97
AT1G11250.1	Thale cress	cytosol	95.64	95.64
KRH10761	Soybean	cytosol	78.52	76.97
KRH21567	Soybean	cytosol	77.85	76.32
KRH41917	Soybean	cytosol	77.85	76.32
VIT_12s0059g02060.t01	Wine grape	cytosol	74.83	73.11
PGSC0003DMT400035739	Potato	cytosol	73.49	70.65
Solyc12g005580.1.1	Tomato	cytosol	73.49	70.65
PGSC0003DMT400055777	Potato	cytosol	71.48	68.49
CDY48554	Canola	cytosol	68.12	66.56
Zm00001d036931_P001	Maize	cytosol	68.79	66.34
CDY21958	Canola	cytosol	67.79	66.23
GSMUA_Achr6P04820_001	Banana	cytosol	56.38	66.14
Zm00001d046482_P001	Maize	cytosol	68.46	66.02
EER89986	Sorghum	cytosol	68.12	65.7
TraesCS6B01G211000.1	Wheat	cytosol	66.78	65.25
GSMUA_Achr10P...	Banana	cytosol	61.07	65.23
TraesCS6D01G169800.1	Wheat	cytosol	66.44	64.92
TraesCS7B01G260100.1	Wheat	cytosol	66.44	64.71
TraesCS7A01G368400.1	Wheat	cytosol	65.44	63.73
TraesCS7D01G354500.1	Wheat	cytosol	64.77	63.07
Os02t0209900-01	Rice	cytosol	65.77	63.02
EES06503	Sorghum	cytosol	64.09	60.63
Zm00001d053607_P001	Maize	cytosol	62.42	59.42
CDY70958	Canola	cytosol	60.74	54.35
CDY01061	Canola	cytosol, plastid	60.74	54.03
CDX73851	Canola	cytosol	60.4	53.89
CDY08492	Canola	cytosol	60.4	53.1
TraesCS6A01G182200.1	Wheat	cytosol	67.11	52.91
CDY21160	Canola	cytosol	23.15	51.88
CDY51747	Canola	cytosol	23.15	51.11
CDY50666	Canola	cytosol	23.15	51.11
CDY23212	Canola	cytosol	56.38	48.98
CDX90604	Canola	cytosol, golgi, nucleus	53.02	47.31
CDY29079	Canola	cytosol, golgi, nucleus	53.02	47.02
CDY31137	Canola	cytosol	43.96	43.09
CDX97497	Canola	cytosol	43.62	42.9
CDX93553	Canola	cytosol	43.96	42.67
CDY29963	Canola	cytosol	44.3	42.58
CDX95050	Canola	cytosol	43.62	42.35
CDY51748	Canola	cytosol	22.48	37.85
CDY50665	Canola	cytosol	21.48	36.78
CDY20921	Canola	cytosol	34.9	36.36
CDX95336	Canola	cytosol	12.75	36.19
CDY46302	Canola	cytosol	34.56	35.76
CDY21161	Canola	cytosol	21.48	35.75
HORVU7Hr1G085550.1	Barley	cytosol	37.58	35.56
CDY29223	Canola	cytosol	34.23	35.54
HORVU6Hr1G038490.4	Barley	nucleus	36.91	34.92
CDY25157	Canola	cytosol	23.49	34.65

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	GO:A0A078HAC9	UniProt:A0A078HAC9	EnsemblPlants:CDY34656
ProteinID:CDY34656	ProteinID:CDY34656.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00057114001	InterPro:IPR000727	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF198	SMART:SM00397	SMART:SM00503	InterPro:SNARE
SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EECC60
SEG:seg	:	:	:	:	:

Description

BnaC08g42150DBnaC08g42150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAC9]

Coordinates

chrLK032338:-:312068..313169

Molecular Weight (calculated)

33883.6 Da

IEP (calculated)

6.385

GRAVY (calculated)

-0.560

Length

298 amino acids

Sequence
(BLAST)

001: MNDLFSNSFK RNQAQFGDVE AGQETMNLDK FFEDVENVKD DMKGIETLYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVG QVLKRVKMIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNDEYKE TVERRYFTIT GEQADEQTVD NLIASGESEN FLQKAIQEQG RGQIMDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV VFILLLIPAL PHIMLMLK

Best Arabidopsis Sequence Match ( AT1G11250.1 )
(BLAST)

001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK

Arabidopsis Description

SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.