Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G211000.1 | Wheat | cytosol | 98.69 | 98.69 |
| Os02t0209900-01 | Rice | cytosol | 80.0 | 78.46 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 96.72 | 78.04 |
| Zm00001d053607_P001 | Maize | cytosol | 79.34 | 77.32 |
| EES06503 | Sorghum | cytosol | 78.69 | 76.19 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 72.46 | 72.22 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 58.36 | 70.08 |
| GSMUA_Achr10P... | Banana | cytosol | 63.61 | 69.53 |
| KRH41917 | Soybean | cytosol | 68.52 | 68.75 |
| Bra031761.1-P | Field mustard | cytosol | 37.05 | 68.48 |
| KRH21567 | Soybean | cytosol | 68.2 | 68.42 |
| KRH10761 | Soybean | cytosol | 67.87 | 68.09 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 67.87 | 67.21 |
| AT1G11250.1 | Thale cress | cytosol | 65.57 | 67.11 |
| CDY34843 | Canola | cytosol | 65.25 | 66.78 |
| CDY34656 | Canola | cytosol | 64.92 | 66.44 |
| Bra031759.1-P | Field mustard | cytosol | 64.92 | 66.44 |
| CDY20986 | Canola | cytosol | 64.59 | 66.11 |
| CDY48554 | Canola | cytosol | 65.9 | 65.9 |
| CDY21958 | Canola | cytosol | 65.9 | 65.9 |
| Bra034202.1-P | Field mustard | cytosol | 65.9 | 65.9 |
| Bra016846.1-P | Field mustard | cytosol | 64.26 | 65.77 |
| CDY70107 | Canola | cytosol | 63.93 | 65.44 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 22.3 | 65.38 |
| AT1G61290.2 | Thale cress | cytosol | 64.92 | 65.35 |
| AT4G03330.1 | Thale cress | cytosol | 65.25 | 65.25 |
| CDY19350 | Canola | cytosol | 63.61 | 65.1 |
| CDX97943 | Canola | cytosol | 63.61 | 65.1 |
| Bra019872.1-P | Field mustard | cytosol | 63.61 | 65.1 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 64.59 | 64.59 |
| PGSC0003DMT400035739 | Potato | cytosol | 65.25 | 64.19 |
| Solyc12g005580.1.1 | Tomato | cytosol | 64.92 | 63.87 |
| PGSC0003DMT400055777 | Potato | cytosol | 63.93 | 62.7 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 49.51 | 47.94 |
| TraesCS2D01G224100.1 | Wheat | cytosol | 43.61 | 43.89 |
| TraesCS5D01G109500.1 | Wheat | cytosol | 43.93 | 43.79 |
| TraesCS4D01G066100.1 | Wheat | cytosol | 44.92 | 43.35 |
| TraesCS2D01G248900.1 | Wheat | cytosol | 42.3 | 42.72 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 41.97 | 40.63 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 26.89 | 26.8 |
| TraesCS2D01G219400.1 | Wheat | cytosol | 23.93 | 21.04 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| EnsemblPlantsGene:TraesCS6D01G169800 | EnsemblPlants:TraesCS6D01G169800.1 | TIGR:cd00179 | TIGR:cd15848 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:-:156437124..156438117
Molecular Weight (calculated)
33616.2 Da
IEP (calculated)
6.806
GRAVY (calculated)
-0.283
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSSF KKYADLKDQV ALDEMEAGGG ANLDMFFEDV EGVKEDIRSL EAMHRRLQSV NEESKTAHDA RAVKSLRARM DGDVEQVLRR AKVVKAKLEA
101: LDRANAASRK LPGCGAGSST DRTRSSVVSG LGNKLKDLMD DFQGLRTRMA AEYKETVARR YYTVTGETAE ESTIDALISS GESETFLQKA IQRDQGRGQV
201: MATVSEIQER HDAVKDIERS LLELHQVFLD MAALVEAQGH QLNNIETHVA RASSFVIRGT VELDSARVYQ KSSRKWACIA VVAGAVLVLV IVLPILVNLK
301: LLSGR
101: LDRANAASRK LPGCGAGSST DRTRSSVVSG LGNKLKDLMD DFQGLRTRMA AEYKETVARR YYTVTGETAE ESTIDALISS GESETFLQKA IQRDQGRGQV
201: MATVSEIQER HDAVKDIERS LLELHQVFLD MAALVEAQGH QLNNIETHVA RASSFVIRGT VELDSARVYQ KSSRKWACIA VVAGAVLVLV IVLPILVNLK
301: LLSGR
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.