Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G067200.1 | Wheat | cytosol | 96.84 | 97.45 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 96.84 | 96.84 |
| KXG37622 | Sorghum | cytosol | 82.28 | 83.33 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 81.01 | 82.32 |
| Zm00001d013323_P001 | Maize | cytosol | 81.33 | 81.85 |
| Zm00001d033919_P001 | Maize | plasma membrane | 81.01 | 81.79 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 93.35 | 81.27 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 50.63 | 65.31 |
| VIT_04s0008g02770.t01 | Wine grape | cytosol | 60.76 | 61.74 |
| Solyc06g053760.2.1 | Tomato | cytosol | 60.44 | 61.41 |
| PGSC0003DMT400041982 | Potato | cytosol | 60.13 | 61.09 |
| KRH08461 | Soybean | cytosol | 62.03 | 60.87 |
| KRH70119 | Soybean | cytosol | 60.76 | 60.38 |
| Bra030733.1-P | Field mustard | cytosol | 55.38 | 57.57 |
| CDX97497 | Canola | cytosol | 55.06 | 57.43 |
| AT1G08560.1 | Thale cress | cytosol | 56.33 | 57.42 |
| CDX95050 | Canola | cytosol | 55.7 | 57.33 |
| CDX93553 | Canola | cytosol | 55.06 | 56.68 |
| CDY31137 | Canola | cytosol | 54.43 | 56.58 |
| Bra018615.1-P | Field mustard | cytosol | 54.75 | 56.35 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 43.35 | 44.92 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 40.19 | 41.5 |
| TraesCS2D01G224100.1 | Wheat | cytosol | 37.03 | 38.61 |
| TraesCS2D01G248900.1 | Wheat | cytosol | 36.39 | 38.08 |
| TraesCS5D01G109500.1 | Wheat | cytosol | 33.54 | 34.64 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 31.96 | 33.01 |
| TraesCS2D01G219400.1 | Wheat | cytosol | 21.52 | 19.6 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:13.4.2.3.1 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 |
| PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF91 |
| SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCS4D01G066100 | EnsemblPlants:TraesCS4D01G066100.1 | TIGR:cd00179 | TIGR:cd15848 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:40843300..40844250
Molecular Weight (calculated)
35119.3 Da
IEP (calculated)
6.434
GRAVY (calculated)
-0.315
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFM SYVDLKKAAM KDLEAGGDET ETELTQACGG GATDERLKGF FREAEAVREE MAAIRDALAR LHAANEEGKS LHQPDALRAM RVRVNADIVS
101: VLGRARGIQR ALADMDAANA AQRRLSAGCQ EGTTLDRTRT SVTAGLRKKL KDIMLDFQAL RQRMMSEYKD TVERRYYTLT GEVPEDEVIE RIISEGRGEE
201: IMSAAVAEHG KGAVLAALNE IQDRHDAARE VERSLLELHQ VFLDMAVVVE SQGEKINDIE HHVINARDYV HSGNKELGKA REHQRGSRKC LCIGIILLLL
301: LILIVIVPIA TSLRRS
101: VLGRARGIQR ALADMDAANA AQRRLSAGCQ EGTTLDRTRT SVTAGLRKKL KDIMLDFQAL RQRMMSEYKD TVERRYYTLT GEVPEDEVIE RIISEGRGEE
201: IMSAAVAEHG KGAVLAALNE IQDRHDAARE VERSLLELHQ VFLDMAVVVE SQGEKINDIE HHVINARDYV HSGNKELGKA REHQRGSRKC LCIGIILLLL
301: LILIVIVPIA TSLRRS
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.