Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 89.14 | 91.48 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 84.98 | 91.41 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 60.06 | 78.33 |
| Zm00001d019505_P001 | Maize | nucleus | 67.09 | 73.94 |
| KXG34983 | Sorghum | nucleus, plastid | 65.5 | 70.69 |
| Os02t0437200-01 | Rice | plasma membrane | 30.99 | 65.1 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 49.84 | 62.9 |
| TraesCS2A01G181400.1 | Wheat | plastid | 46.65 | 55.51 |
| Bra026875.1-P | Field mustard | cytosol | 29.07 | 55.49 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 46.65 | 52.9 |
| KRH56857 | Soybean | nucleus | 50.48 | 52.67 |
| KRH63266 | Soybean | nucleus | 48.24 | 51.89 |
| KRH54642 | Soybean | nucleus | 48.24 | 51.71 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 50.16 | 51.48 |
| CDY42860 | Canola | cytosol, plastid | 45.69 | 51.25 |
| CDY47025 | Canola | nucleus, plastid | 45.37 | 51.08 |
| KRH03094 | Soybean | cytosol | 48.88 | 51.0 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 47.6 | 50.68 |
| AT5G61210.1 | Thale cress | nucleus | 48.56 | 50.67 |
| Bra012978.1-P | Field mustard | nucleus | 49.2 | 50.49 |
| CDY02165 | Canola | nucleus | 49.2 | 50.33 |
| CDX73442 | Canola | nucleus | 33.23 | 50.24 |
| CDY23079 | Canola | nucleus | 48.56 | 50.0 |
| TraesCS3A01G391300.1 | Wheat | cytosol | 40.89 | 50.0 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 48.88 | 50.0 |
| AT1G13890.2 | Thale cress | nucleus | 41.53 | 49.43 |
| PGSC0003DMT400083166 | Potato | nucleus | 48.24 | 49.35 |
| TraesCS2A01G180800.1 | Wheat | nucleus, plastid | 41.21 | 49.24 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 47.92 | 49.02 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 43.45 | 48.57 |
| Bra005958.1-P | Field mustard | cytosol | 45.05 | 48.29 |
| KRH70869 | Soybean | cytosol | 43.13 | 48.21 |
| AT5G07880.1 | Thale cress | nucleus | 38.66 | 48.21 |
| CDX78314 | Canola | cytosol | 44.73 | 47.78 |
| KRH75005 | Soybean | cytosol | 42.17 | 47.14 |
| Solyc05g012520.2.1 | Tomato | nucleus | 36.74 | 46.37 |
| CDY16118 | Canola | cytosol | 39.3 | 46.24 |
| CDY33792 | Canola | cytosol | 39.3 | 46.24 |
| TraesCS4A01G055800.1 | Wheat | cytosol, plastid | 36.74 | 46.18 |
| Solyc03g115470.2.1 | Tomato | nucleus | 48.88 | 44.61 |
| PGSC0003DMT400072798 | Potato | cytosol | 37.06 | 43.77 |
| CDX81075 | Canola | nucleus | 13.74 | 43.0 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 43.45 | 39.77 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 43.77 | 39.14 |
| Bra013246.1-P | Field mustard | cytosol | 35.46 | 36.51 |
| Bra032989.1-P | Field mustard | nucleus | 38.34 | 31.33 |
| Bra009311.1-P | Field mustard | plastid | 43.77 | 13.46 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G435200.1 | EnsemblPlantsGene:TraesCS4A01G435200 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR19305 |
| PANTHER:PTHR19305:SF7 | PFscan:PS50192 | SEG:seg | SMART:SM00397 | SUPFAM:SSF58038 | TIGR:cd15841 |
| TIGR:cd15861 | MapMan:22.7.3.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:705537314..705539254
Molecular Weight (calculated)
34014.7 Da
IEP (calculated)
9.931
GRAVY (calculated)
-0.851
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAARSSFFA SHNGKKKPAA SAARNPFDSD SDDDGGMVQR RGPARASSVP TPAAPPARAS PAPVPSDERN SLFAGSAAPG PASSSSSSSA AAARRRYGSD
101: FRDSGGVEAQ SVQELEGYAA YKAEETTRRV DGCLRVAEEM RDTASKTLLQ VHQQGQQIRR THAMALDIDQ DLSRGEKLLG DLGGLFSKKW KPKKNGAIRG
201: PMLTRDDSFI RKGSHMEQRH KLGLSDRPRR SNARQFLSEP TSELEKVEVE KAKQDDGLSD LSDILTELKG MAIDMGTEIE GQTKDLGHAE KDFDELNYRV
301: KGANTRTRRL LGR
101: FRDSGGVEAQ SVQELEGYAA YKAEETTRRV DGCLRVAEEM RDTASKTLLQ VHQQGQQIRR THAMALDIDQ DLSRGEKLLG DLGGLFSKKW KPKKNGAIRG
201: PMLTRDDSFI RKGSHMEQRH KLGLSDRPRR SNARQFLSEP TSELEKVEVE KAKQDDGLSD LSDILTELKG MAIDMGTEIE GQTKDLGHAE KDFDELNYRV
301: KGANTRTRRL LGR
001: MAPKNSSWNP FDDEKEAAKS FSLNPFDDDD DDKEVEKRFT SSLKPSGGKE NQTVQELESY AVYNSEETTK TVQGCLKVAE EIRCDASKTL VMLNEQGDQI
101: TRTHQKTVDL DHHLSRGEKI LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA VDAYQKTQIA KQDEALTDLS
201: ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ SNQRARYLLR K
101: TRTHQKTVDL DHHLSRGEKI LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA VDAYQKTQIA KQDEALTDLS
201: ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ SNQRARYLLR K
Arabidopsis Description
SNAP29SNAP25 homologous protein SNAP29 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.