Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019505_P001 | Maize | nucleus | 86.55 | 88.38 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 69.66 | 69.42 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 72.41 | 68.85 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 70.69 | 65.5 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 54.83 | 64.11 |
| Os02t0437200-01 | Rice | plasma membrane | 32.76 | 63.76 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 51.72 | 62.5 |
| Bra026875.1-P | Field mustard | cytosol | 31.03 | 54.88 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 51.72 | 54.35 |
| EES05172 | Sorghum | cytosol | 48.28 | 53.64 |
| KRH56857 | Soybean | nucleus | 53.1 | 51.33 |
| KRH54642 | Soybean | nucleus | 51.38 | 51.03 |
| KRH03094 | Soybean | cytosol | 52.76 | 51.0 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 53.45 | 50.82 |
| KRH63266 | Soybean | nucleus | 50.69 | 50.52 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 48.62 | 50.36 |
| CDY42860 | Canola | cytosol, plastid | 48.28 | 50.18 |
| AT5G61210.1 | Thale cress | nucleus | 51.38 | 49.67 |
| CDY47025 | Canola | nucleus, plastid | 47.59 | 49.64 |
| Solyc05g012520.2.1 | Tomato | nucleus | 42.07 | 49.19 |
| AT1G13890.2 | Thale cress | nucleus | 44.48 | 49.05 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 49.31 | 48.64 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 50.69 | 48.04 |
| CDY23079 | Canola | nucleus | 50.34 | 48.03 |
| CDX73442 | Canola | nucleus | 34.14 | 47.83 |
| Bra012978.1-P | Field mustard | nucleus | 50.0 | 47.54 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 50.0 | 47.39 |
| CDY02165 | Canola | nucleus | 50.0 | 47.39 |
| PGSC0003DMT400083166 | Potato | nucleus | 49.66 | 47.06 |
| Bra005958.1-P | Field mustard | cytosol | 46.55 | 46.23 |
| AT5G07880.1 | Thale cress | nucleus | 40.0 | 46.22 |
| CDX78314 | Canola | cytosol | 46.21 | 45.73 |
| CDY16118 | Canola | cytosol | 41.72 | 45.49 |
| CDY33792 | Canola | cytosol | 41.72 | 45.49 |
| KRH70869 | Soybean | cytosol | 43.79 | 45.36 |
| KRH75005 | Soybean | cytosol | 43.1 | 44.64 |
| PGSC0003DMT400072798 | Potato | cytosol | 40.69 | 44.53 |
| Solyc03g115470.2.1 | Tomato | nucleus | 52.41 | 44.31 |
| EER95289 | Sorghum | cytosol | 36.55 | 43.27 |
| CDX81075 | Canola | nucleus | 14.14 | 41.0 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 44.83 | 38.01 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 44.83 | 37.14 |
| Bra013246.1-P | Field mustard | cytosol | 35.86 | 34.21 |
| Bra032989.1-P | Field mustard | nucleus | 38.28 | 28.98 |
| Bra009311.1-P | Field mustard | plastid | 45.52 | 12.97 |
Protein Annotations
| EnsemblPlants:KXG34983 | EnsemblPlantsGene:SORBI_3002G118600 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 | ProteinID:KXG34983 | ProteinID:KXG34983.1 | ProteinID:KXG34984.1 |
| SEG:seg | SMART:SM00397 | SUPFAM:SSF58038 | UniParc:UPI0001C80DF1 | UniProt:A0A1B6QAQ0 | MapMan:22.7.3.1 |
Description
hypothetical protein
Coordinates
chr2:-:14779179..14781093
Molecular Weight (calculated)
32006.4 Da
IEP (calculated)
9.757
GRAVY (calculated)
-0.971
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGKRSFFA PKKKATNPFD SGSDDDKPQR RPARASSVPP PESDEQQRGG SSLSGSAGGD RAGLFSSSST NHHYRNDFRD AGGLESQSVQ ELEGYAAYKA
101: EETTRRAQGC VRIAEEMRDT ASKTLVTVHQ QGQQIHRTHM MAVDIDQDLS RSEKLLGDLG GLFSKKWKPK KNGAIRGPML TRDDSFIRKG SHLEQRQKLG
201: LADHPPRSNA RQFSSEPSSA LEKVEMEKGK QDDALSDLSN ILIELKGMAV DMGSEIERQT KAMGDAEKDY DELNIRVKGA NTRARRLLGR
101: EETTRRAQGC VRIAEEMRDT ASKTLVTVHQ QGQQIHRTHM MAVDIDQDLS RSEKLLGDLG GLFSKKWKPK KNGAIRGPML TRDDSFIRKG SHLEQRQKLG
201: LADHPPRSNA RQFSSEPSSA LEKVEMEKGK QDDALSDLSN ILIELKGMAV DMGSEIERQT KAMGDAEKDY DELNIRVKGA NTRARRLLGR
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.