Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16118 | Canola | cytosol | 100.0 | 61.65 |
| CDY33792 | Canola | cytosol | 100.0 | 61.65 |
| AT1G13890.2 | Thale cress | nucleus | 85.98 | 53.61 |
| KRH70869 | Soybean | cytosol | 71.34 | 41.79 |
| Solyc05g012520.2.1 | Tomato | nucleus | 62.8 | 41.53 |
| KRH75005 | Soybean | cytosol | 70.12 | 41.07 |
| PGSC0003DMT400072798 | Potato | cytosol | 60.37 | 37.36 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 56.1 | 37.1 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 62.8 | 36.79 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 57.32 | 34.06 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 60.98 | 34.01 |
| Bra012978.1-P | Field mustard | nucleus | 62.8 | 33.77 |
| Zm00001d019505_P001 | Maize | nucleus | 54.88 | 31.69 |
| Bra005958.1-P | Field mustard | cytosol | 55.49 | 31.16 |
| KXG34983 | Sorghum | nucleus, plastid | 54.88 | 31.03 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 54.88 | 30.93 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 55.49 | 29.84 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 55.49 | 29.07 |
| Bra013246.1-P | Field mustard | cytosol | 43.29 | 23.36 |
| Bra032989.1-P | Field mustard | nucleus | 43.9 | 18.8 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 26.83 | 18.33 |
| Bra009311.1-P | Field mustard | plastid | 56.71 | 9.14 |
| Os02t0437200-01 | Rice | plasma membrane | 7.93 | 8.72 |
Protein Annotations
| EnsemblPlants:Bra026875.1 | EnsemblPlants:Bra026875.1-P | EnsemblPlantsGene:Bra026875 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom |
| ncoils:Coil | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 | SEG:seg | SMART:SM00397 |
| SUPFAM:SSF58038 | UniParc:UPI0002542E88 | UniProt:M4EDL5 | MapMan:22.7.3.1 | : | : |
Description
AT1G13890 (E=9e-067) SNAP30, ATSNAP30 | SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30); SNAP receptor
Coordinates
chrA09:-:34074509..34075600
Molecular Weight (calculated)
17982.5 Da
IEP (calculated)
8.986
GRAVY (calculated)
-0.951
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHAQGEQIN RTHVMAVEMD KDLGRGEKLL NSLGGMFSKP WKPKKGKEIA GPMITPDKAS KKSANNKEER EKLGLAAKGR SSSQPIPSDQ PTNAMQKVEQ
101: EKAKQDDGLS DLSDILGDLK GMALDMGSEL DKQNKALDHL DGDIDELNNR VQGANQRARH LLSK
101: EKAKQDDGLS DLSDILGDLK GMALDMGSEL DKQNKALDHL DGDIDELNNR VQGANQRARH LLSK
001: MFGFFKSPGN NKLPNESSNN KGGTITAGRR TSSEPILITP DFDDDDKYKN GFNDSGGLQS QTTEELEKYA VYKAEETTKG VNNCLKIAED IRSDGARTLE
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK
Arabidopsis Description
SNAP30Putative SNAP25 homologous protein SNAP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMG8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.