Factsheet for Bra029328.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019760.1-P
Bra026974.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61210.1	Bra019760.1-P	AT1G12360.1	11591731
AT5G61210.1	Bra026974.1-P	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42860	Canola	cytosol, plastid	90.14	94.98
AT5G61210.1	Thale cress	nucleus	86.39	84.67
Bra012978.1-P	Field mustard	nucleus	86.05	82.95
Bra005958.1-P	Field mustard	cytosol	69.39	69.86
KRH56857	Soybean	nucleus	62.59	61.33
Bra026875.1-P	Field mustard	cytosol	34.01	60.98
GSMUA_Achr4P23350_001	Banana	nucleus	51.02	60.48
KRH03094	Soybean	cytosol	61.56	60.33
PGSC0003DMT400083166	Potato	nucleus	62.59	60.13
VIT_17s0000g06860.t01	Wine grape	nucleus	62.24	60.0
Solyc06g069570.2.1	Tomato	nucleus, plastid	62.24	59.8
KRH63266	Soybean	nucleus	59.18	59.79
KRH54642	Soybean	nucleus	59.18	59.59
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	60.88	58.5
GSMUA_Achr5P01680_001	Banana	cytosol	52.72	56.16
Solyc03g115470.2.1	Tomato	nucleus	61.22	52.48
Bra013246.1-P	Field mustard	cytosol	52.38	50.66
Zm00001d019505_P001	Maize	nucleus	48.3	50.0
TraesCS7A01G049300.1	Wheat	nucleus, plastid	49.32	49.83
KXG34983	Sorghum	nucleus, plastid	48.64	49.31
TraesCS7D01G044400.1	Wheat	nucleus, plastid	50.34	48.52
TraesCS4A01G435200.1	Wheat	cytosol, plastid	50.68	47.6
Bra032989.1-P	Field mustard	nucleus	58.16	44.65
HORVU7Hr1G008760.1	Barley	nucleus, plastid	35.71	43.75
Os02t0437200-01	Rice	plasma membrane	22.11	43.62
Bra009311.1-P	Field mustard	plastid	67.35	19.45

Protein Annotations

EnsemblPlants:Bra029328.1	EnsemblPlants:Bra029328.1-P	EnsemblPlantsGene:Bra029328	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom
ncoils:Coil	PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	SEG:seg	SMART:SM00397
SUPFAM:SSF58038	UniParc:UPI00025457F8	UniProt:M4EKL1	MapMan:22.7.3.1	:	:

Description

AT5G61210 (E=1e-129) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding

Coordinates

chrA02:+:25848945..25850580

Molecular Weight (calculated)

32862.3 Da

IEP (calculated)

7.897

GRAVY (calculated)

-1.061

Length

294 amino acids

Sequence
(BLAST)

001: MFGSKKSPAN LPKHNSADPG FHKPNPFDSD DTTLNPSKRT SSEPSLAITT NPFDEVEKGS SSSSSKQSLT SNSRHQYKNN FRDSGGVENQ SVQELEGYAV
101: YKAEETTKSV QGCLKVAEEI RSDATRTLVM LHDQGEQITR THHKAVEIDH DLSRGEKLLG SLGGMFSKTW KPKKTRPING PVISRDHSPT RRVNHLEKRE
201: KLGLSPAPKA QSRTREPLPE SADAYQRVEM EKAKQDDGLS DLSDLLGELK NMAVDMGSEM EKQKDGLDHL HDDVDELNYR VQQSNQRASR LLRK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.