CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04038
KRH28021
KRH57307
KRH77416

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	KRH04038	AT1G12360.1	11591731
AT5G07880.1	KRH28021	AT1G12360.1	11591731
AT5G07880.1	KRH57307	AT1G12360.1	11591731
AT5G07880.1	KRH77416	AT1G12360.1	11591731
AT5G61210.1	KRH04038	AT1G12360.1	11591731
AT5G61210.1	KRH28021	AT1G12360.1	11591731
AT5G61210.1	KRH57307	AT1G12360.1	11591731
AT5G61210.1	KRH77416	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54642	Soybean	nucleus	87.97	87.67
KRH56857	Soybean	nucleus	74.23	72.0
KRH03094	Soybean	cytosol	72.85	70.67
GSMUA_Achr4P23350_001	Banana	nucleus	52.92	62.1
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	63.57	60.46
CDY42860	Canola	cytosol, plastid	57.73	60.22
Solyc06g069570.2.1	Tomato	nucleus, plastid	63.23	60.13
PGSC0003DMT400083166	Potato	nucleus	63.23	60.13
VIT_17s0000g06860.t01	Wine grape	nucleus	62.89	60.0
Bra029328.1-P	Field mustard	nucleus, plastid	59.79	59.18
AT5G61210.1	Thale cress	nucleus	60.48	58.67
CDY02165	Canola	nucleus	61.17	58.17
Bra012978.1-P	Field mustard	nucleus	60.48	57.7
CDY23079	Canola	nucleus	60.14	57.57
CDY47025	Canola	nucleus, plastid	54.98	57.55
KRH70869	Soybean	cytosol	54.3	56.43
GSMUA_Achr5P01680_001	Banana	cytosol	52.92	55.8
Solyc03g115470.2.1	Tomato	nucleus	64.95	55.1
KRH75005	Soybean	cytosol	52.23	54.29
Bra005958.1-P	Field mustard	cytosol	53.95	53.77
CDX78314	Canola	cytosol	53.26	52.9
TraesCS7A01G049300.1	Wheat	nucleus, plastid	52.58	52.58
CDX73442	Canola	nucleus	37.11	52.17
Zm00001d019505_P001	Maize	nucleus	49.83	51.06
AT5G07880.1	Thale cress	nucleus	43.99	51.0
KXG34983	Sorghum	nucleus, plastid	50.52	50.69
TraesCS7D01G044400.1	Wheat	nucleus, plastid	51.2	48.85
TraesCS4A01G435200.1	Wheat	cytosol, plastid	51.89	48.24
CDX69988	Canola	endoplasmic reticulum, extracellular	54.64	46.49
CDX99033	Canola	endoplasmic reticulum, extracellular	53.95	44.86
CDX81075	Canola	nucleus	15.12	44.0
Os02t0437200-01	Rice	plasma membrane	22.34	43.62
HORVU7Hr1G008760.1	Barley	nucleus, plastid	35.4	42.92
Bra013246.1-P	Field mustard	cytosol	41.58	39.8
Bra032989.1-P	Field mustard	nucleus	46.05	34.99
Bra009311.1-P	Field mustard	plastid	54.3	15.52

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100794076	MapMan:22.7.3.1	EMBL:ACUP02002652	EMBL:BT093594	UniProt:C6T803
EnsemblPlantsGene:GLYMA_04G164400	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000727
ProteinID:KRH63265.1	EnsemblPlants:KRH63266	ProteinID:KRH63266	ProteinID:KRH63266.1	PFscan:PS50192	PANTHER:PTHR19305
PANTHER:PTHR19305:SF7	SMART:SM00397	SUPFAM:SSF58038	InterPro:T_SNARE_dom	UniParc:UPI0001B15D9F	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:40973232..40975775

Molecular Weight (calculated)

32066.3 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.934

Length

291 amino acids

Sequence
(BLAST)

001: MFGSKKTPLR DAKPTSVDHA HNPFDSDEDT KDNKYNSSKK TLTNTNPFDD DHVNATGHSS SSSYGLSSTH RNRYKNDFRD SGGLESQSVQ ELENYAVYKA
101: EETTNSVNSC LKIAEEMRED ATKTLVMLHQ QGEQITRSHH VAADIDHDLS RGEKLLGSLG GMFSKTWKPK KTGTITGPVV FGEDPVRKKG NHLEQREKLG
201: LTSAPKGQSK SRTTLSEPSN VLEKVEVEKG KQDDALSDLS DLLGELKGMA IDMGSEIGSQ NQALDGFDND MEKLIVRVNG ANQRGRRLLG K

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.