CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03094
KRH08461
KRH32861	plasma membrane
KRH54642
KRH56857
KRH63266
KRH70119
KRH72169	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12360.1	KRH08461	AT1G08560.1	11157980
AT1G12360.1	KRH70119	AT1G08560.1	11157980
AT1G12360.1	KRH32861	AT3G11820.1	23572542
AT1G12360.1	KRH72169	AT3G11820.1	23572542
AT1G12360.1	KRH32861	AT3G11820.1	23572542
AT1G12360.1	KRH72169	AT3G11820.1	23572542
AT1G12360.1	KRH03094	AT5G07880.1	11591731
AT1G12360.1	KRH54642	AT5G07880.1	11591731
AT1G12360.1	KRH56857	AT5G07880.1	11591731
AT1G12360.1	KRH63266	AT5G07880.1	11591731
AT1G12360.1	KRH03094	AT5G61210.1	11591731
AT1G12360.1	KRH54642	AT5G61210.1	11591731
AT1G12360.1	KRH56857	AT5G61210.1	11591731
AT1G12360.1	KRH63266	AT5G61210.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28021	Soybean	nucleus	91.9	94.12
KRH57307	Soybean	cytosol, nucleus	81.15	82.86
KRH04038	Soybean	cytosol	80.71	82.28
CDY26558	Canola	cytosol	18.11	77.36
Bra026974.1-P	Field mustard	cytosol	74.23	75.68
CDY26559	Canola	cytosol	74.23	75.68
VIT_13s0019g05000.t01	Wine grape	cytosol	73.93	75.49
CDY15993	Canola	cytosol	74.08	75.41
AT1G12360.1	Thale cress	cytosol	73.64	75.08
Bra019760.1-P	Field mustard	cytosol	69.96	74.45
CDX98070	Canola	cytosol	72.9	74.44
CDY30074	Canola	cytosol	73.2	74.4
Os02t0452500-01	Rice	cytosol, plasma membrane	12.52	73.91
Solyc08g079520.2.1	Tomato	nucleus	71.43	72.82
KRH65274	Soybean	cytosol	62.74	63.68
KRH76261	Soybean	nucleus	62.59	63.43
KRH64544	Soybean	endoplasmic reticulum	17.38	20.77
KRH53395	Soybean	cytosol	17.08	20.42
KRH42240	Soybean	endoplasmic reticulum, nucleus	17.08	18.65
KRH58359	Soybean	endoplasmic reticulum	17.08	18.65

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:100778770	MapMan:13.4.2.4	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10
EMBL:ACUP02000672	EnsemblPlantsGene:GLYMA_01G212200	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987
GO:GO:0016192	InterPro:IPR027482	UniProt:K7K529	EnsemblPlants:KRH77416	ProteinID:KRH77416	ProteinID:KRH77416.1
PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF59	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2
InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI0002964BA7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:54369873..54380660

Molecular Weight (calculated)

77562.3 Da

IEP (calculated)

6.737

GRAVY (calculated)

-0.431

Length

679 amino acids

Sequence
(BLAST)

001: MSMSDSDSSS YAGADYKSFK QISRERLLHE MLRSAKTGDS KSTLKVLIMD KLTVKIMSHL CKMTDINGEG VSLGEDLYKQ RQPLPTWDAI YFIQPTRENV
101: IMFLSDMSGR TPLYRKAFVF FSSAISKELV MDIKKDMEVL TRLGALREMN LEYFPIDSQG FITNNERALE ELFGDEENNH KGVTCLNVMA KRIATVFASL
201: REFPSVRFRA AKSLDATTMT TFQDLIPTKL AAGIWDCLVK YKKSIPNFPQ TETCELLILD RSIDQIAPVI HEWTYDAMCH DLLNMEGNKY VHEVPGKSGG
301: PAERKEVLLE DHDPVWLELR HAHIADASER LHEKMTNFIS KNKAAQIQHG SNSSSEMSTR DIQTIVQALP QYSEQIDKLS LHVEIAGKIN RIIRESGLRE
401: LGQLEQDLVF GDATTKDVIK FFTMKEDITH ENKLRLLMIL ASVYPEKFEG EKGQNLMRLA KLTEEDMNIV PNFRMLGGQP VTKKSLTAAF GLKFDIHKKK
501: HAARKERPGE EEKWQLSRFY PIIEESLYDV LVCDEWMFIQ ELLEKLMKNE LSKEDYPCLN DPSPSYQGSP FSGPVNQNPH SMRSRRTPTW ARPQGSEDGY
601: SSDSVLRHAS SDFRRMGQRI FLFIVGGATR SELRVCHKLT EKLKREIILG SSSIDDPSQF ITKLKTITTH EISLDDIQI

Best Arabidopsis Sequence Match ( AT1G02010.1 )
(BLAST)

001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW

Arabidopsis Description

SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.