Factsheet for VIT_13s0019g05000.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, golgi
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g02770.t01
VIT_08s0032g01150.t01	plasma membrane
VIT_17s0000g06860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12360.1	VIT_04s0008g02770.t01	AT1G08560.1	11157980
AT1G12360.1	VIT_08s0032g01150.t01	AT3G11820.1	23572542
AT1G12360.1	VIT_08s0032g01150.t01	AT3G11820.1	23572542
AT1G12360.1	VIT_17s0000g06860.t01	AT5G07880.1	11591731
AT1G12360.1	VIT_17s0000g06860.t01	AT5G61210.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26558	Canola	cytosol	19.55	81.76
Solyc08g079520.2.1	Tomato	nucleus	80.15	80.03
CDY15993	Canola	cytosol	79.7	79.46
Bra019760.1-P	Field mustard	cytosol	75.94	79.15
Os02t0452500-01	Rice	cytosol, plasma membrane	13.68	79.13
Bra026974.1-P	Field mustard	cytosol	79.25	79.13
CDY26559	Canola	cytosol	79.25	79.13
AT1G12360.1	Thale cress	cytosol	79.1	78.98
CDX98070	Canola	cytosol	78.5	78.5
KRH57307	Soybean	cytosol, nucleus	78.35	78.35
CDY30074	Canola	cytosol	78.5	78.14
KRH04038	Soybean	cytosol	77.74	77.63
VIT_15s0048g00970.t01	Wine grape	cytosol	70.98	76.38
KRH28021	Soybean	nucleus	76.09	76.32
VIT_15s0045g00060.t01	Wine grape	cytosol	51.13	74.56
KRH77416	Soybean	cytosol	75.49	73.93
AT4G12120.1	Thale cress	cytosol	68.42	68.73
Bra029438.1-P	Field mustard	cytosol	64.96	65.55
CDY68111	Canola	cytosol	65.71	65.32
CDX90817	Canola	cytosol	65.71	65.32
CDX86721	Canola	cytosol	64.36	64.95
CDX94488	Canola	cytosol	64.81	64.81
Bra000761.1-P	Field mustard	cytosol	65.41	64.16
CDY49318	Canola	plastid	9.47	51.64
Bra038812.1-P	Field mustard	plastid	9.32	48.44
VIT_03s0038g03110.t01	Wine grape	cytosol	18.8	21.04
VIT_18s0001g15600.t01	Wine grape	cytosol	17.74	20.77
VIT_03s0038g00020.t01	Wine grape	cytosol	2.11	19.18

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:100258197	wikigene:100258197	MapMan:13.4.2.4	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060
Gene3D:3.90.830.10	ProteinID:CCB56144	ProteinID:CCB56144.1	UniProt:F6HNC5	EMBL:FN595998	GO:GO:0006810
GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	EntrezGene:LOC100258197
wikigene:LOC100258197	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF59	SUPFAM:SSF56815
InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI00015C985D	ArrayExpress:VIT_13s0019g05000	EnsemblPlantsGene:VIT_13s0019g05000
EnsemblPlants:VIT_13s0019g05000.t01	unigene:Vvi.13636	RefSeq:XP_002272338	RefSeq:XP_002272338.1	RefSeq:XP_010658346.1	:

Description

No Description!

Coordinates

chr13:+:6704432..6772318

Molecular Weight (calculated)

75242.5 Da

IEP (calculated)

8.070

GRAVY (calculated)

-0.427

Length

665 amino acids

Sequence
(BLAST)

001: MSLSDSDASS VGGDYRNFRQ ISRERLLHEM LRSAKTGDSK STWKVLIMDK RTIKVMSYSC KMADITEEGV SLVEDIYKRR QPLPSMDAIY FIQPTKENVI
101: MFLSDMSGRT PLYKKAFVFF SSPISRELVN LVKRDALVLP RIGALREMNL EYFAIDSQGF VTDDERALEE LFGDEENSRR GDACLNVMAT RIATVFASLR
201: ELPFVRYRAA KFLDPTTATT FRDLIPTKLA AAVWNCLLKY KETFPNLPTT ETCELLILDR SVDQIAPIIH EWTYDAMCHD LLNMEGNKYV HEVPSKTGGP
301: PEKKEVLLED HDPVWLELRH AHIADASERL HEKMTNFISK NKAAQIQHGS RGGGELSTRD LQKMVQALPQ YSEQIEKLSL HVEIAGKINR IIGEMGLREL
401: GQLEQDLVFG DAGTKEVINY LRTKLDATRE NKLRLLMIYA AIYPEKFEGD KASKLMKLAG LLSDDMNAVN NMRLLEGSSD AKKSTIGAFS LKFEVPKRKH
501: AARKERKGEE ETWQLSRFYP MIEELIEKLS KGELPKNDYP CMNDPSASFG GPSQAASVRG SQGQAPHSVR ARRSTWARPR GSDDGYSSDS ILRHASSDFK
601: KMGQRIFVFI VGGATRSELR VCHKLTEKLK REVVLGSTSL DDPPQFITKL KLLSSQEFSL DDLQI

Best Arabidopsis Sequence Match ( AT1G12360.1 )
(BLAST)

001: MSYSDSDSSS HGGEYKNFRQ ITRERLLYEM LRSAKTGSSK STWKVLIMDK LTVKIMSYAC KMADITQEGV SLVEDIFRRR QPLPSMDAIY FIQPTKENVI
101: MFLSDMSGKS PLYKKAFVFF SSPVSKELVG HIKKDSSVLP RIGALREMNL EFFAIDSQGF ITDHERALED LFGDEETSRK GDACLNVMAS RIATVFASLR
201: EFPAVRYRAA KSLDASTMTT LRDLIPTKLA AGIWNCLAKH KQSIENFPQT ETCELLILDR SIDQIAPVIH EWTYDAMCHD LLNMEGNKYV HVIPSKSGGQ
301: PEKKDVLLEE HDPIWLELRH AHIADASERL HDKMTNFLSK NKAAQLQGKR DGAELSTRDL QKMVQALPQY SEQIDKLSLH VEIARKLNDL IREQGLRELG
401: QLEQDLVFGD AGMKDVIKYL STQEEASREG KLRLLMILAT IYPEKFEGEK GQNLMKLAKL SSDDMTAVNN MSLLGSAVDA KKNTPGGFTL KFDLHKKKRA
501: VRKERQEEAA WQLSRFYPMI EELIEKLSKG ELPKEDFPCM NDPSPSFHGS TSLSSAASSS QGQAAQSMRS RRTPTWAKPR GSDDGYSSDS VLRHASSDFR
601: KMGQRIFVFI VGGATRSELK VCHKLSTKLK REVILGSTSL DDPPQFITKL KLLTANDDLS LDDLQI

Arabidopsis Description

KEUSNARE-interacting protein KEULE [Source:UniProtKB/Swiss-Prot;Acc:Q9C5X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.