Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90817 | Canola | cytosol | 96.76 | 98.06 |
| AT4G12120.1 | Thale cress | cytosol | 86.73 | 88.82 |
| Bra029438.1-P | Field mustard | cytosol | 85.4 | 87.86 |
| Bra038812.1-P | Field mustard | plastid | 13.13 | 69.53 |
| Bra026974.1-P | Field mustard | cytosol | 65.34 | 66.52 |
| Bra019760.1-P | Field mustard | cytosol | 61.95 | 65.83 |
| VIT_13s0019g05000.t01 | Wine grape | cytosol | 64.16 | 65.41 |
| Solyc08g079520.2.1 | Tomato | nucleus | 63.86 | 65.02 |
| Os02t0452500-01 | Rice | cytosol, plasma membrane | 10.32 | 60.87 |
| Bra032660.1-P | Field mustard | cytosol | 50.74 | 57.72 |
| Bra008294.1-P | Field mustard | cytosol | 18.14 | 21.62 |
| Bra024484.1-P | Field mustard | cytosol | 16.81 | 17.9 |
| Bra032934.1-P | Field mustard | cytosol | 7.37 | 16.08 |
Protein Annotations
| EnsemblPlants:Bra000761.1 | EnsemblPlants:Bra000761.1-P | EnsemblPlantsGene:Bra000761 | Gene3D:3.40.50.2060 | GO:GO:0006810 | GO:GO:0006904 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 |
| PANTHER:PTHR11679:SF59 | PFAM:PF00995 | PIRSF:PIRSF005715 | SEG:seg | SUPFAM:SSF56815 | UniParc:UPI000253FCEC |
| UniProt:M4C983 | MapMan:13.4.2.4 | : | : | : | : |
Description
AT4G12120 (E=0.0) SEC1B, ATSEC1B | SEC1B; protein transporter
Coordinates
chrA03:-:12928010..12932385
Molecular Weight (calculated)
76860.5 Da
IEP (calculated)
7.201
GRAVY (calculated)
-0.401
Length
678 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSDSGSSS NGGDYKTFRQ ITRESELLLP ILCVLKSGLL HASGLLYEML RPEGSKSTWK VLVVDELTVK ILSSSCKMSE FTQQGISLVE IITKQRQPMT
101: SMEAIYFIQP TEANVNALLS DMTGQSPLYK KAFVFFSSPV SRSLVTLIRK DMKAMKRIGA LKEMNLEYIS MDSQGFITNN ENALEDLYSD EENHQRADAC
201: LNVVAKRIAT VLASLKEYPV VRYRGAKGLD ATTMTSYREL IPTKLAASVW NCLTKYKQTI EDFPQTETCE LLILDRSIDQ IAPLIHEWTY DAMCHDLLKM
301: EGNKYTHEVP SKTGDNTEKK EVLLDEEDPI WVELRDVHIA DASERLHEKM TNFVSKNKAA QLKQSSKDFG DLSSKDLQKM VHALPQYSEQ IDKLSLHVDI
401: ARTINRTIME QGLRELGQLE QDLVFGDAGR KDVIKFLSTN NDINQESKLR LMMIFAEIYP KKFAGEKGRK MMELAKLSGD DVVAVNNLRL LGPVHTECKS
501: STTGSFPLKF DVLKTKRAAR RDRVGDTQTW MLSRFYPIIE ELVEKLNKGH LPKQDYPCMN EPRPTFYSSS QSPSASPVLP HSRRTPSWAR RHLSDDGYFS
601: DSVLGRASSC IKKKGQRIFV FIVGGATRSE LRACHKLTEK LDREIILGSS SFLDPHTFLT KMKQMNEEEE ISLDDIDI
101: SMEAIYFIQP TEANVNALLS DMTGQSPLYK KAFVFFSSPV SRSLVTLIRK DMKAMKRIGA LKEMNLEYIS MDSQGFITNN ENALEDLYSD EENHQRADAC
201: LNVVAKRIAT VLASLKEYPV VRYRGAKGLD ATTMTSYREL IPTKLAASVW NCLTKYKQTI EDFPQTETCE LLILDRSIDQ IAPLIHEWTY DAMCHDLLKM
301: EGNKYTHEVP SKTGDNTEKK EVLLDEEDPI WVELRDVHIA DASERLHEKM TNFVSKNKAA QLKQSSKDFG DLSSKDLQKM VHALPQYSEQ IDKLSLHVDI
401: ARTINRTIME QGLRELGQLE QDLVFGDAGR KDVIKFLSTN NDINQESKLR LMMIFAEIYP KKFAGEKGRK MMELAKLSGD DVVAVNNLRL LGPVHTECKS
501: STTGSFPLKF DVLKTKRAAR RDRVGDTQTW MLSRFYPIIE ELVEKLNKGH LPKQDYPCMN EPRPTFYSSS QSPSASPVLP HSRRTPSWAR RHLSDDGYFS
601: DSVLGRASSC IKKKGQRIFV FIVGGATRSE LRACHKLTEK LDREIILGSS SFLDPHTFLT KMKQMNEEEE ISLDDIDI
001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
Arabidopsis Description
SEC1BProtein transport Sec1b [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ77]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.