Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86721 | Canola | cytosol | 94.74 | 95.6 |
| AT4G12120.1 | Thale cress | cytosol | 87.52 | 87.92 |
| CDY68111 | Canola | cytosol | 87.37 | 86.85 |
| CDX90817 | Canola | cytosol | 87.22 | 86.7 |
| CDY49318 | Canola | plastid | 14.89 | 81.15 |
| CDY15993 | Canola | cytosol | 66.92 | 66.72 |
| CDY26559 | Canola | cytosol | 66.62 | 66.52 |
| CDX98070 | Canola | cytosol | 66.17 | 66.17 |
| CDY30074 | Canola | cytosol | 66.32 | 66.02 |
| VIT_13s0019g05000.t01 | Wine grape | cytosol | 64.81 | 64.81 |
| CDY26558 | Canola | cytosol | 15.34 | 64.15 |
| Solyc08g079520.2.1 | Tomato | nucleus | 63.31 | 63.21 |
| Os02t0452500-01 | Rice | cytosol, plasma membrane | 9.92 | 57.39 |
| CDY38041 | Canola | nucleus | 56.99 | 56.15 |
| CDY70457 | Canola | cytosol | 12.93 | 24.02 |
| CDY38360 | Canola | cytosol | 19.1 | 22.32 |
| CDX79223 | Canola | cytosol, plastid | 2.11 | 21.21 |
| CDY13575 | Canola | cytosol | 17.59 | 20.42 |
| CDX79215 | Canola | cytosol | 12.48 | 20.05 |
| CDY39875 | Canola | cytosol | 9.77 | 19.88 |
| CDY29213 | Canola | cytosol | 17.14 | 18.94 |
| CDY63506 | Canola | cytosol | 16.99 | 18.77 |
| CDX79189 | Canola | cytosol | 7.67 | 18.55 |
| CDY52165 | Canola | cytosol | 8.72 | 16.11 |
| CDX79222 | Canola | cytosol, mitochondrion | 6.47 | 15.87 |
| CDY48989 | Canola | cytosol | 7.07 | 15.26 |
| CDY52164 | Canola | cytosol | 1.2 | 14.81 |
| CDY71507 | Canola | cytosol, golgi | 5.56 | 12.46 |
Protein Annotations
| EnsemblPlants:CDX94488 | EnsemblPlantsGene:GSBRNA2T00157688001 | Gene3D:3.40.50.2060 | GO:A0A078E4Y4 | GO:GO:0006810 | GO:GO:0006904 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 |
| PANTHER:PTHR11679:SF59 | PFAM:PF00995 | PIRSF:PIRSF005715 | ProteinID:CDX94488 | ProteinID:CDX94488.1 | SEG:seg |
| SUPFAM:SSF56815 | UniParc:UPI0004EE4F1C | MapMan:13.4.2.4 | : | : | : |
Description
BnaC09g23480D
Coordinates
chrLK031882:-:201863..206188
Molecular Weight (calculated)
75824.3 Da
IEP (calculated)
8.489
GRAVY (calculated)
-0.421
Length
665 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSDSGSYS NGGDHKSFRQ ITRERLLYEM LMPEKNGTPI SVWKVLILDK FTVKVMSSVA KMSEISQQGI SLAEVITRQR QPMTSFDAIY FIQPTESNVN
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVT LIRKDMRAMK RISALKEMNL EYISMDIQGF VTNNENALED LYSDEENHQR ADYCLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA AGVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLKMEGNKYT YEVPSRSGGD
301: PEMREVLLDE EDPIWVELRD VHIADASERL HEKMTNFVSK NKAAQLKHSS KDSGDISSKD LKKVVHALPQ YSEQIDKLSL HVETWLMSLQ IARTIMEQGL
401: RELGKLEQDL VFGDAGRKDV IKFLSTNNVI NQESKLRLMM ILAAIYPKKF EGEKGRKMME LAKLSGDDVV AVNNLRLLGP VHTESKRSTT GSFSLKFDVL
501: KKKRAARKDR VGETQTWQLS RFYPIVEELV EKLNKGHLPK QDYPCMNEPK PTFYSASQSP SASPVLPHSR RTPTWARRHL SEDGYFSDSV LGRASSGFKK
601: KGQRIFVFIV GGATRSELRV CHKLTEKLDR EVILGSSSFL DPQTFLTKMK QINEEEEISL DDIDI
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVT LIRKDMRAMK RISALKEMNL EYISMDIQGF VTNNENALED LYSDEENHQR ADYCLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA AGVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLKMEGNKYT YEVPSRSGGD
301: PEMREVLLDE EDPIWVELRD VHIADASERL HEKMTNFVSK NKAAQLKHSS KDSGDISSKD LKKVVHALPQ YSEQIDKLSL HVETWLMSLQ IARTIMEQGL
401: RELGKLEQDL VFGDAGRKDV IKFLSTNNVI NQESKLRLMM ILAAIYPKKF EGEKGRKMME LAKLSGDDVV AVNNLRLLGP VHTESKRSTT GSFSLKFDVL
501: KKKRAARKDR VGETQTWQLS RFYPIVEELV EKLNKGHLPK QDYPCMNEPK PTFYSASQSP SASPVLPHSR RTPTWARRHL SEDGYFSDSV LGRASSGFKK
601: KGQRIFVFIV GGATRSELRV CHKLTEKLDR EVILGSSSFL DPQTFLTKMK QINEEEEISL DDIDI
001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
Arabidopsis Description
SEC1BProtein transport Sec1b [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ77]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.