CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g00020.t01	Wine grape	cytosol	14.14	57.53
CDY70457	Canola	cytosol	49.16	40.78
CDX79223	Canola	cytosol, plastid	6.73	30.3
CDX79215	Canola	cytosol	41.08	29.47
CDY38360	Canola	cytosol	50.51	26.36
GSMUA_Achr10P...	Banana	cytosol	44.78	23.54
Os02t0437800-02	Rice	cytosol, plasma membrane	41.08	21.52
TraesCS2D01G259600.1	Wheat	cytosol	39.73	20.81
TraesCS2B01G277800.2	Wheat	cytosol	39.73	20.81
TraesCS2A01G264300.1	Wheat	cytosol	39.73	20.81
EES13788	Sorghum	cytosol	39.73	20.81
CDX79222	Canola	cytosol, mitochondrion	18.52	20.3
CDY13575	Canola	cytosol	38.05	19.72
Zm00001d049522_P001	Maize	cytosol, plasma membrane	41.08	19.27
HORVU2Hr1G062800.7	Barley	cytosol, plastid	40.07	18.95
CDY26558	Canola	cytosol	6.4	11.95
CDY48989	Canola	cytosol	8.42	8.12
CDY52165	Canola	cytosol	8.08	6.67
CDX79189	Canola	cytosol	5.72	6.18
CDY63506	Canola	cytosol	12.46	6.15
CDY29213	Canola	cytosol	12.46	6.15
CDX86721	Canola	cytosol	12.79	5.77
CDX94488	Canola	cytosol	12.46	5.56
CDX98070	Canola	cytosol	12.46	5.56
CDY30074	Canola	cytosol	12.46	5.54
CDY26559	Canola	cytosol	12.12	5.41
CDY15993	Canola	cytosol	12.12	5.4
CDY68111	Canola	cytosol	11.45	5.08
CDX90817	Canola	cytosol	11.45	5.08
CDY39875	Canola	cytosol	5.39	4.89
CDY38041	Canola	nucleus	10.44	4.59
Solyc10g074520.1.1	Tomato	cytosol	4.38	4.3
CDY49318	Canola	plastid	0.34	0.82
Solyc10g074510.1.1	Tomato	cytosol	0.0	0.0
CDY52164	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.90.830.10	MapMan:35.1	GO:A0A078K0S7	UniProt:A0A078K0S7	EnsemblPlants:CDY71507	ProteinID:CDY71507
ProteinID:CDY71507.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00016735001	PFAM:PF00995	PANTHER:PTHR11679
PANTHER:PTHR11679:SF3	SUPFAM:SSF56815	InterPro:Sec1-like	InterPro:Sec1-like_sf	TMHMM:TMhelix	UniParc:UPI0004EF4C11
SEG:seg	:	:	:	:	:

Description

BnaCnng73210DBnaCnng73210D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K0S7]

Coordinates

chrLK046141:-:33..2590

Molecular Weight (calculated)

33793.0 Da

IEP (calculated)

8.011

GRAVY (calculated)

0.017

Length

297 amino acids

Sequence
(BLAST)

001: LSDVLDLKTF YAETGFQVPI VGFMCSSIGA YIVVKVLKLK PPVSFVFCIN IVLVAGDWRK YLDWRIWASL VTDHSMSGSS KKVGYLRHEE VLLILGSETV
101: KSDNHEAYDR FNLRPTSENI QKLRYQLANP RFGEHHLFSP ICWKDTQIST RLYSNLLIRT SVFMLQEFYA DFVAGDPYHF TLNMPSTHLY MLPAVVDPSG
201: PLILQKRIAH ETAAMVHELI GLQDNKVDLR FIGSLPKDQQ VEVVLLSEQD SFFKSNMYLG ILGMNDFQKV AKSNQNIHTV GKNMASLAPA KTFSFWC

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.