Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G435000.1 | |
TraesCS7A01G049200.1 | |
TraesCS7D01G044300.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2B01G277800.2 | Wheat | cytosol | 99.82 | 99.82 |
TraesCS2A01G264300.1 | Wheat | cytosol | 99.82 | 99.82 |
Os02t0437800-02 | Rice | cytosol, plasma membrane | 92.24 | 92.24 |
EES13788 | Sorghum | cytosol | 92.24 | 92.24 |
HORVU2Hr1G062800.7 | Barley | cytosol, plastid | 99.47 | 89.81 |
Zm00001d049522_P001 | Maize | cytosol, plasma membrane | 92.24 | 82.62 |
GSMUA_Achr10P... | Banana | cytosol | 80.42 | 80.71 |
VIT_18s0001g15600.t01 | Wine grape | cytosol | 79.37 | 79.23 |
CDX79189 | Canola | cytosol | 38.1 | 78.55 |
KRH64544 | Soybean | endoplasmic reticulum | 78.48 | 78.35 |
KRH53395 | Soybean | cytosol | 78.48 | 78.35 |
Solyc04g064820.2.1 | Tomato | cytosol, nucleus | 76.72 | 76.58 |
Bra008294.1-P | Field mustard | cytosol | 76.72 | 76.45 |
AT1G77140.1 | Thale cress | cytosol | 76.72 | 76.45 |
CDY38360 | Canola | cytosol | 76.54 | 76.27 |
CDY70457 | Canola | cytosol | 46.38 | 73.46 |
CDX79215 | Canola | cytosol | 50.97 | 69.81 |
CDY13575 | Canola | cytosol | 67.55 | 66.84 |
VIT_03s0038g00020.t01 | Wine grape | cytosol | 8.11 | 63.01 |
CDX79223 | Canola | cytosol, plastid | 7.23 | 62.12 |
CDX79222 | Canola | cytosol, mitochondrion | 21.34 | 44.65 |
CDY71507 | Canola | cytosol, golgi | 20.81 | 39.73 |
TraesCS5D01G045800.1 | Wheat | plastid | 20.11 | 18.39 |
TraesCS2D01G060000.1 | Wheat | nucleus | 20.28 | 17.24 |
TraesCS3D01G542100.1 | Wheat | cytosol | 19.93 | 17.2 |
TraesCS6D01G179600.1 | Wheat | nucleus | 19.4 | 16.62 |
Solyc10g074510.1.1 | Tomato | cytosol | 1.76 | 16.39 |
Solyc10g074520.1.1 | Tomato | cytosol | 8.29 | 15.56 |
Protein Annotations
Gene3D:1.25.40.60 | MapMan:22.7.7.1 | Gene3D:3.40.50.1910 | Gene3D:3.40.50.2060 | Gene3D:3.90.830.10 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005794 | GO:GO:0005802 |
GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009705 | GO:GO:0009987 |
GO:GO:0016020 | GO:GO:0016192 | InterPro:IPR027482 | PFAM:PF00995 | PIRSF:PIRSF005715 | PANTHER:PTHR11679 |
PANTHER:PTHR11679:SF3 | SUPFAM:SSF56815 | InterPro:Sec-1-like_dom2 | InterPro:Sec1-like | InterPro:Sec1-like_sf | EnsemblPlantsGene:TraesCS2D01G259600 |
EnsemblPlants:TraesCS2D01G259600.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:315855122..315870440
Molecular Weight (calculated)
64571.7 Da
IEP (calculated)
6.962
GRAVY (calculated)
-0.217
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLIPLIRDY IDRMLQDISG MKVLILDPQT VGMVSVVYSQ SDLLRKEVFL VETVDDASSS RASMAHLKAV YFLRPSSDNV QKLRRHLSAP RFAECHLFFS
101: NILKIPQIQV LADSDEQEVV QQIQEFYADF CAIDPFHFTL NIHNNHIYML PTVVDPPGMQ SFCDRAVDGI ASVFLALKRR PVIRYQRTSD VAKRIAQETS
201: RLMYEQESGL FDFRRTENSS LLLVIDRRDD PVTPLLNQWT YQAMVHELIG IENNKVDLKE FANVPKDQQE VVLSAVQDDF FRVNMFENFG DLGMNVKRMV
301: DDFQHLSKSS QNFQSIDDMA KFVSNYPEYR KTHGNVTKHV ALVSEMSRMV EERKLMQVSQ TEQELACASG QAAAFEAVTS LLNNESVSDI DRLRLVMLYA
401: LRYEKESPVQ LMQLFNKLAS RSAKYKSGLV QFLLKQAGVD KRTGDLYGNR DLLNIARNMA RGLKGVENVY TQHQPLIFQT MEGIVKGRLR DADYPLVGNH
501: FQQGRPQDVV IFIVGGTTYE EARSVALYNA ANPGVRFFLG GSVVLNSKRF LENLGEAQRI SKSSTLL
101: NILKIPQIQV LADSDEQEVV QQIQEFYADF CAIDPFHFTL NIHNNHIYML PTVVDPPGMQ SFCDRAVDGI ASVFLALKRR PVIRYQRTSD VAKRIAQETS
201: RLMYEQESGL FDFRRTENSS LLLVIDRRDD PVTPLLNQWT YQAMVHELIG IENNKVDLKE FANVPKDQQE VVLSAVQDDF FRVNMFENFG DLGMNVKRMV
301: DDFQHLSKSS QNFQSIDDMA KFVSNYPEYR KTHGNVTKHV ALVSEMSRMV EERKLMQVSQ TEQELACASG QAAAFEAVTS LLNNESVSDI DRLRLVMLYA
401: LRYEKESPVQ LMQLFNKLAS RSAKYKSGLV QFLLKQAGVD KRTGDLYGNR DLLNIARNMA RGLKGVENVY TQHQPLIFQT MEGIVKGRLR DADYPLVGNH
501: FQQGRPQDVV IFIVGGTTYE EARSVALYNA ANPGVRFFLG GSVVLNSKRF LENLGEAQRI SKSSTLL
001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
Arabidopsis Description
VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.