Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 83.23 | 83.23 |
| Zm00001d039404_P001 | Maize | plasma membrane | 78.66 | 79.88 |
| Zm00001d013996_P003 | Maize | mitochondrion | 77.44 | 79.38 |
| OQU86127 | Sorghum | mitochondrion | 78.35 | 78.83 |
| Os06t0116300-01 | Rice | plasma membrane | 78.35 | 77.88 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 83.54 | 75.69 |
| Zm00001d045530_P001 | Maize | cytosol | 19.82 | 72.22 |
| GSMUA_Achr11P... | Banana | mitochondrion | 67.68 | 68.31 |
| VIT_14s0060g01540.t01 | Wine grape | mitochondrion | 67.99 | 68.2 |
| EER87742 | Sorghum | mitochondrion | 48.17 | 66.39 |
| GSMUA_Achr10P... | Banana | mitochondrion | 66.77 | 66.36 |
| Bra040527.1-P | Field mustard | mitochondrion | 63.11 | 65.09 |
| CDY18808 | Canola | mitochondrion | 62.8 | 64.78 |
| KRG92945 | Soybean | mitochondrion | 64.33 | 64.72 |
| Solyc01g100170.2.1 | Tomato | mitochondrion | 63.72 | 64.51 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 62.5 | 64.47 |
| KRH33850 | Soybean | endoplasmic reticulum | 63.72 | 64.11 |
| CDY05193 | Canola | mitochondrion | 61.89 | 64.04 |
| CDY27747 | Canola | mitochondrion | 61.28 | 63.41 |
| Bra039417.1-P | Field mustard | mitochondrion | 61.28 | 63.41 |
| AT5G26980.1 | Thale cress | mitochondrion | 60.98 | 62.11 |
| KRH68233 | Soybean | plastid | 60.06 | 61.56 |
| KRG96492 | Soybean | plastid | 60.37 | 61.11 |
| AT3G05710.2 | Thale cress | mitochondrion | 61.59 | 61.03 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 47.26 | 59.62 |
| CDY52786 | Canola | mitochondrion | 57.93 | 59.01 |
| CDY22037 | Canola | mitochondrion | 56.71 | 57.76 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 56.1 | 57.68 |
| Bra036287.1-P | Field mustard | cytosol, mitochondrion | 50.61 | 57.64 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 56.1 | 56.97 |
| PGSC0003DMT400063615 | Potato | mitochondrion | 63.72 | 56.95 |
| CDX97432 | Canola | extracellular, vacuole | 4.27 | 53.85 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 50.3 | 51.56 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.4 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF05739 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF83 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| EnsemblPlantsGene:TraesCS4A01G435000 | EnsemblPlants:TraesCS4A01G435000.1 | TIGR:cd15845 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:705517725..705521196
Molecular Weight (calculated)
32102.9 Da
IEP (calculated)
9.024
GRAVY (calculated)
-0.375
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTPLF RKYRDALRHV XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXCSRG AAMVGLPPAW VDVSEEISAN MQRAKTKMAE
101: LAKAHAKALM PSFGDGRDDQ RAIEVLTHEI TDLLKRSEKK LQKLSMKDSS EDSNVRKNVQ RSLATDLQTL SMEFRKKQST YLKQLRQQKE GQDGVDLEMN
201: INGSKSTFEL EDDEFEDVGF TEVQMSKLKK SEAFTRERER EIEQVAQSVN ELAQIMKDLS VLVIDQGTIV DRIDYNVQNV AASVEEGYKQ LQKAERTQKK
301: GGMVMCATVL VILIFILIIL LVLKKILF
101: LAKAHAKALM PSFGDGRDDQ RAIEVLTHEI TDLLKRSEKK LQKLSMKDSS EDSNVRKNVQ RSLATDLQTL SMEFRKKQST YLKQLRQQKE GQDGVDLEMN
201: INGSKSTFEL EDDEFEDVGF TEVQMSKLKK SEAFTRERER EIEQVAQSVN ELAQIMKDLS VLVIDQGTIV DRIDYNVQNV AASVEEGYKQ LQKAERTQKK
301: GGMVMCATVL VILIFILIIL LVLKKILF
001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
Arabidopsis Description
SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.