Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER87742 | Sorghum | mitochondrion | 62.31 | 68.07 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 76.15 | 60.37 |
| Os06t0116300-01 | Rice | plasma membrane | 72.69 | 57.27 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 52.31 | 57.14 |
| Zm00001d039404_P001 | Maize | plasma membrane | 68.85 | 55.42 |
| Zm00001d013996_P003 | Maize | mitochondrion | 67.31 | 54.69 |
| OQU86127 | Sorghum | mitochondrion | 68.46 | 54.6 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 75.77 | 54.42 |
| VIT_14s0060g01540.t01 | Wine grape | mitochondrion | 59.62 | 47.4 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 59.62 | 47.26 |
| GSMUA_Achr10P... | Banana | mitochondrion | 59.62 | 46.97 |
| GSMUA_Achr11P... | Banana | mitochondrion | 58.08 | 46.46 |
| CDY18808 | Canola | mitochondrion | 56.15 | 45.91 |
| Bra040527.1-P | Field mustard | mitochondrion | 56.15 | 45.91 |
| Solyc01g100170.2.1 | Tomato | mitochondrion | 56.92 | 45.68 |
| Bra036287.1-P | Field mustard | cytosol, mitochondrion | 50.38 | 45.49 |
| CDY05193 | Canola | mitochondrion | 55.38 | 45.43 |
| KRG92945 | Soybean | mitochondrion | 56.54 | 45.09 |
| KRH33850 | Soybean | endoplasmic reticulum | 56.54 | 45.09 |
| CDY27747 | Canola | mitochondrion | 54.62 | 44.8 |
| Bra039417.1-P | Field mustard | mitochondrion | 54.62 | 44.8 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 54.62 | 44.65 |
| KRH68233 | Soybean | plastid | 53.46 | 43.44 |
| AT3G05710.2 | Thale cress | mitochondrion | 55.0 | 43.2 |
| AT5G26980.1 | Thale cress | mitochondrion | 53.08 | 42.86 |
| KRG96492 | Soybean | plastid | 53.08 | 42.59 |
| CDY52786 | Canola | mitochondrion | 51.54 | 41.61 |
| CDY22037 | Canola | mitochondrion | 51.15 | 41.3 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 50.0 | 40.75 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 50.0 | 40.62 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 50.38 | 40.56 |
| PGSC0003DMT400063615 | Potato | mitochondrion | 56.54 | 40.05 |
| Zm00001d045530_P001 | Maize | cytosol | 9.23 | 26.67 |
| CDX97432 | Canola | extracellular, vacuole | 0.38 | 3.85 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.1.4 | UniProt:A0A287VGZ0 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| EnsemblPlantsGene:HORVU7Hr1G008640 | EnsemblPlants:HORVU7Hr1G008640.2 | InterPro:IPR000727 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF83 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:T_SNARE_dom | UniParc:UPI000B470FA3 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:11246868..11249407
Molecular Weight (calculated)
28916.0 Da
IEP (calculated)
4.982
GRAVY (calculated)
-0.580
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTPLF RKYRDALRHV RAPAGAPSAS SSSSGGGAGG PAVIEMASLL RPDRNYAPLS TDDPSASSRS SPLSLSYEKH FLGLVTIVRI DFNAEEVGEK
101: AAEAVHERFL GRFECQKECP DLQTLSMEFR KKQSTYLKQL RQQKEGQDGV DLEMNMNGSK STFELEDDEF EDVGFTEVQM SKLKKSEAFT REREREIEQV
201: AQSVNELAQI MKDLSVLVID QGTIVDRIDY NVQNVAASVE EGYKQLQKVS SSPPFPASPI
101: AAEAVHERFL GRFECQKECP DLQTLSMEFR KKQSTYLKQL RQQKEGQDGV DLEMNMNGSK STFELEDDEF EDVGFTEVQM SKLKKSEAFT REREREIEQV
201: AQSVNELAQI MKDLSVLVID QGTIVDRIDY NVQNVAASVE EGYKQLQKVS SSPPFPASPI
001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSRGTITV GLPPDWVDVS EEISVYIQRA
101: RTKMAELGKA HAKALMPSFG DGKEDQHQIE TLTQEVTFLL KKSEKQLQRL SAAGPSEDSN VRKNVQRSLA TDLQNLSMEL RKKQSTYLKR LRLQKEDGAD
201: LEMNLNGSRY KAEDDDFDDM VFSEHQMSKI KKSEEISIER EKEIQQVVES VSELAQIMKD LSALVIDQGT IVDRIDYNIQ NVASTVDDGL KQLQKAERTQ
301: RQGGMVMCAS VLVILCFIML VLLILKEILL
101: RTKMAELGKA HAKALMPSFG DGKEDQHQIE TLTQEVTFLL KKSEKQLQRL SAAGPSEDSN VRKNVQRSLA TDLQNLSMEL RKKQSTYLKR LRLQKEDGAD
201: LEMNLNGSRY KAEDDDFDDM VFSEHQMSKI KKSEEISIER EKEIQQVVES VSELAQIMKD LSALVIDQGT IVDRIDYNIQ NVASTVDDGL KQLQKAERTQ
301: RQGGMVMCAS VLVILCFIML VLLILKEILL
Arabidopsis Description
SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.