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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • nucleus 1
  • mitochondrion 5
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:golgi
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G05710.2 Thale cress mitochondrion 86.65 84.29
VIT_14s0060g01540.t01 Wine grape mitochondrion 77.33 76.15
KRG92945 Soybean mitochondrion 77.02 76.07
Solyc01g100170.2.1 Tomato mitochondrion 75.47 75.0
KRH33850 Soybean endoplasmic reticulum 75.16 74.23
Zm00001d039404_P001 Maize plasma membrane 71.12 70.9
Zm00001d013996_P003 Maize mitochondrion 69.88 70.31
OQU86127 Sorghum mitochondrion 71.12 70.25
GSMUA_Achr11P... Banana mitochondrion 70.5 69.85
TraesCS7D01G044300.1 Wheat cytosol 51.24 69.33
GSMUA_Achr10P... Banana mitochondrion 70.81 69.09
Os06t0116300-01 Rice plasma membrane 70.81 69.09
TraesCS7A01G049200.1 Wheat mitochondrion 70.19 68.9
PGSC0003DMT400063615 Potato mitochondrion 76.4 67.03
GSMUA_Achr4P18460_001 Banana mitochondrion 69.57 66.87
AT4G02195.1 Thale cress cytosol, mitochondrion, plastid 63.98 63.78
HORVU7Hr1G008670.5 Barley mitochondrion 69.25 61.6
Zm00001d045530_P001 Maize cytosol 17.08 61.11
TraesCS4A01G435000.1 Wheat mitochondrion 62.11 60.98
EER87742 Sorghum mitochondrion 43.79 59.24
HORVU7Hr1G008640.2 Barley mitochondrion 42.86 53.08
Protein Annotations
Gene3D:1.20.5.110Gene3D:1.20.58.70MapMan:22.7.1.4EntrezGene:832756ProteinID:AAB61065.1ProteinID:AED93636.1
ProteinID:AED93637.1EMBL:AF067789ProteinID:ANM70302.1ArrayExpress:AT5G26980EnsemblPlantsGene:AT5G26980RefSeq:AT5G26980
TAIR:AT5G26980RefSeq:AT5G26980-TAIR-GEnsemblPlants:AT5G26980.1TAIR:AT5G26980.1GO:GO:0000149GO:GO:0003674
GO:GO:0005484GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005794GO:GO:0005802GO:GO:0006810GO:GO:0006886GO:GO:0006906
GO:GO:0008150GO:GO:0009987GO:GO:0015031GO:GO:0016020GO:GO:0016021GO:GO:0016043
GO:GO:0016192GO:GO:0031201GO:GO:0048278GO:GO:0061025InterPro:IPR000727RefSeq:NP_001031950.1
RefSeq:NP_001331924.1RefSeq:NP_198050.1UniProt:O65359PFAM:PF05739PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020100PO:PO:0020137
PO:PO:0025022ScanProsite:PS00914PFscan:PS50192PANTHER:PTHR19957PANTHER:PTHR19957:SF83SMART:SM00397
SMART:SM00503InterPro:SNARESUPFAM:SSF47661Symbol:SYP41InterPro:Syntaxin/epimorphin_CSInterPro:Syntaxin_N
TMHMM:TMhelixInterPro:T_SNARE_domUniParc:UPI00001362E5SEG:seg::
Description
SYP41Syntaxin-41 [Source:UniProtKB/Swiss-Prot;Acc:O65359]
Coordinates
chr5:-:9488133..9491092
Molecular Weight (calculated)
36136.6 Da
IEP (calculated)
9.015
GRAVY (calculated)
-0.452
Length
322 amino acids
Sequence
(BLAST)
001: MATRNRTLLF RKYRNSLRSV RAPLSSSSLT GTRSGGVGPV IEMASTSLLN PNRSYAPIST EDPGTSSKGA ITVGLPPAWV DVSEEISVNI QRARTKMAEL
101: GKAHAKALMP SFGDGKEDQH NIESLTQEIT FLLKKSEKQL QRLSASGPSE DSNVRKNVQR SLATDLQLLS MELRKKQSTY LKRLRQQKED GMDLEMNLSR
201: NRYRPEEDDF GDMLNEHQMS KIKKSEEVSV EREKEIQQVV ESVNDLAQIM KDLSALVIDQ GTIVDRIDYN IENVATTVED GLKQLQKAER TQRHGGMVKC
301: ASVLVILCFI MLLLLILKEI FL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.