Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22037 | Canola | mitochondrion | 91.33 | 91.61 |
| Bra036287.1-P | Field mustard | cytosol, mitochondrion | 80.81 | 90.62 |
| CDY52786 | Canola | mitochondrion | 89.47 | 89.75 |
| CDX97432 | Canola | extracellular, vacuole | 6.5 | 80.77 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 68.42 | 69.5 |
| KRG96492 | Soybean | plastid | 66.87 | 66.67 |
| KRH68233 | Soybean | plastid | 65.94 | 66.56 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 48.92 | 66.39 |
| Zm00001d039404_P001 | Maize | plasma membrane | 65.33 | 65.33 |
| Zm00001d013996_P003 | Maize | mitochondrion | 64.71 | 65.31 |
| OQU86127 | Sorghum | mitochondrion | 65.63 | 65.03 |
| GSMUA_Achr11P... | Banana | mitochondrion | 65.33 | 64.92 |
| Os06t0116300-01 | Rice | plasma membrane | 66.25 | 64.85 |
| AT5G26980.1 | Thale cress | mitochondrion | 63.78 | 63.98 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 64.71 | 63.72 |
| GSMUA_Achr10P... | Banana | mitochondrion | 64.09 | 62.73 |
| AT3G05710.2 | Thale cress | mitochondrion | 61.61 | 60.12 |
| GSMUA_Achr4P18460_001 | Banana | mitochondrion | 62.23 | 60.0 |
| Zm00001d045530_P001 | Maize | cytosol | 16.72 | 60.0 |
| EER87742 | Sorghum | mitochondrion | 43.34 | 58.82 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 57.89 | 58.62 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 63.78 | 56.91 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 56.97 | 56.1 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 52.32 | 52.81 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 40.56 | 50.38 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.4 | EntrezGene:827505 | UniProt:A0A178V3T8 | ProteinID:AAC28171.1 |
| ProteinID:AAC78709.1 | ProteinID:AEE82136.1 | EMBL:AF154574 | EMBL:AK229319 | ArrayExpress:AT4G02195 | EnsemblPlantsGene:AT4G02195 |
| RefSeq:AT4G02195 | TAIR:AT4G02195 | RefSeq:AT4G02195-TAIR-G | EnsemblPlants:AT4G02195.1 | TAIR:AT4G02195.1 | Unigene:At.15659 |
| GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0006906 | GO:GO:0006950 | GO:GO:0007030 | GO:GO:0007034 | GO:GO:0008150 |
| GO:GO:0009306 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | GO:GO:0061025 |
| GO:GO:1900150 | InterPro:IPR000727 | RefSeq:NP_567223.1 | ProteinID:OAP00075.1 | PFAM:PF05739 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF83 | UniProt:Q0WNW7 | UniProt:Q9SWH4 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | Symbol:SYP42 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI00001362E6 | SEG:seg | : | : | : | : |
Description
SYP42Syntaxin-42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWH4]
Coordinates
chr4:-:969994..972342
Molecular Weight (calculated)
36434.6 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.533
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTTVY RKHRDACKSA RAPLSLSASD SFGGPVIEMV SGSFSRSNHS SYAPLNSYDP GPSSSDAFTI GMPPAWVDDS EEITFNIQKV RDKMNELAKA
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.