Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 5
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22037 | Canola | mitochondrion | 96.58 | 96.58 |
| Bra036287.1-P | Field mustard | cytosol, mitochondrion | 86.34 | 96.53 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 89.75 | 89.47 |
| CDX97432 | Canola | extracellular, vacuole | 6.52 | 80.77 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 68.01 | 68.87 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 50.31 | 68.07 |
| Zm00001d039404_P001 | Maize | plasma membrane | 67.39 | 67.18 |
| Os06t0116300-01 | Rice | plasma membrane | 68.63 | 66.97 |
| Zm00001d013996_P003 | Maize | mitochondrion | 66.46 | 66.88 |
| OQU86127 | Sorghum | mitochondrion | 67.7 | 66.87 |
| KRH68233 | Soybean | plastid | 65.53 | 65.94 |
| KRG96492 | Soybean | plastid | 66.15 | 65.74 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 66.77 | 65.55 |
| GSMUA_Achr11P... | Banana | mitochondrion | 65.53 | 64.92 |
| CDY18808 | Canola | mitochondrion | 63.66 | 64.47 |
| CDY27747 | Canola | mitochondrion | 63.04 | 64.04 |
| CDY05193 | Canola | mitochondrion | 63.04 | 64.04 |
| GSMUA_Achr4P18460_001 | Banana | mitochondrion | 64.6 | 62.09 |
| GSMUA_Achr10P... | Banana | mitochondrion | 63.35 | 61.82 |
| EER87742 | Sorghum | mitochondrion | 44.41 | 60.08 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 59.32 | 59.87 |
| Zm00001d045530_P001 | Maize | cytosol | 16.46 | 58.89 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 66.15 | 58.84 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 59.01 | 57.93 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 53.73 | 54.06 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 41.61 | 51.54 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.4 | GO:A0A078ISF7 | UniProt:A0A078ISF7 | EnsemblPlants:CDY52786 |
| ProteinID:CDY52786 | ProteinID:CDY52786.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| EnsemblPlantsGene:GSBRNA2T00007843001 | InterPro:IPR000727 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF83 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EEA9E2 | SEG:seg | : |
Description
BnaCnng23310DBnaCnng23310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISF7]
Coordinates
chrLK033130:+:61279..63794
Molecular Weight (calculated)
35974.0 Da
IEP (calculated)
6.413
GRAVY (calculated)
-0.517
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTTVY RKHRDACKSA RAPLSDSFGG PVIEMVSGSF ARSNHSSYAP LSTSDPGPSS SDDAFTIGLP PAWVDDSEEI TFNIQKVRDK MGELAKAHSK
101: ALMPTFGDNR GDQRAVEMIT HEITDLLRKS EKRLHNLSTK GGGPSEESNL RKNVQRSLAT DLQSLSMELR RKQSTYLKRL QQQKEGQDGV DLEFNINGKM
201: SRMDEDEELG GMGFDEHQTV TLKEGQHVSA EREREIQQVL GSVNDLAQIM KDLSTLVIDQ GTIVDRIDYN IQNVSASVEE GYKQLQKAER TQREGAMVKC
301: AMILLILCII MIVLLVLKNV LF
101: ALMPTFGDNR GDQRAVEMIT HEITDLLRKS EKRLHNLSTK GGGPSEESNL RKNVQRSLAT DLQSLSMELR RKQSTYLKRL QQQKEGQDGV DLEFNINGKM
201: SRMDEDEELG GMGFDEHQTV TLKEGQHVSA EREREIQQVL GSVNDLAQIM KDLSTLVIDQ GTIVDRIDYN IQNVSASVEE GYKQLQKAER TQREGAMVKC
301: AMILLILCII MIVLLVLKNV LF
001: MATRNRTTVY RKHRDACKSA RAPLSLSASD SFGGPVIEMV SGSFSRSNHS SYAPLNSYDP GPSSSDAFTI GMPPAWVDDS EEITFNIQKV RDKMNELAKA
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
Arabidopsis Description
SYP42Syntaxin-42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWH4]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.