CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27747	Canola	mitochondrion	98.74	98.74
CDY18808	Canola	mitochondrion	92.74	92.45
AT3G05710.2	Thale cress	mitochondrion	89.59	85.8
Solyc01g100170.2.1	Tomato	mitochondrion	76.66	75.0
VIT_14s0060g01540.t01	Wine grape	mitochondrion	76.97	74.62
KRG92945	Soybean	mitochondrion	76.34	74.23
KRH33850	Soybean	endoplasmic reticulum	75.08	73.01
OQU86127	Sorghum	mitochondrion	74.76	72.7
Zm00001d039404_P001	Maize	plasma membrane	73.82	72.45
Zm00001d013996_P003	Maize	mitochondrion	72.87	72.19
TraesCS7D01G044300.1	Wheat	cytosol	53.31	71.01
Os06t0116300-01	Rice	plasma membrane	73.82	70.91
TraesCS7A01G049200.1	Wheat	mitochondrion	71.92	69.51
CDX97432	Canola	extracellular, vacuole	5.68	69.23
GSMUA_Achr11P...	Banana	mitochondrion	70.66	68.92
GSMUA_Achr4P18460_001	Banana	mitochondrion	71.29	67.46
GSMUA_Achr10P...	Banana	mitochondrion	70.03	67.27
PGSC0003DMT400063615	Potato	mitochondrion	77.6	67.03
CDY22037	Canola	mitochondrion	65.62	64.6
CDY52786	Canola	mitochondrion	64.04	63.04
HORVU7Hr1G008670.5	Barley	mitochondrion	71.61	62.71
TraesCS4A01G435000.1	Wheat	mitochondrion	64.04	61.89
EER87742	Sorghum	mitochondrion	46.37	61.76
Zm00001d045530_P001	Maize	cytosol	16.4	57.78
HORVU7Hr1G008640.2	Barley	mitochondrion	45.43	55.38

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.4	GO:A0A078EZV3	EnsemblPlants:CDY05193	ProteinID:CDY05193
ProteinID:CDY05193.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00119999001	InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF83	SMART:SM00397	SMART:SM00503	InterPro:SNARE
SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EE23C8

Description

BnaC05g46100D

Coordinates

chrLK031960:+:263591..265760

Molecular Weight (calculated)

35554.8 Da

IEP (calculated)

8.208

GRAVY (calculated)

-0.457

Length

317 amino acids

Sequence
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMTESKSG VGPVIEMAST SLLHPKRSYT PVSTEDPANS SKGAVTVGLP PDWVDVSEEI SVNIQRARTK MAELGKAHAK
101: ALMPSFGDGK EDQHQIESLT QEVTFLLRKS EKQLQRLSKG GPSEDSSVRK NVQRSLATDL QQLSMELRKK QSTYLKRLRL QKEDGGDLEM NLNGSSSRAE
201: DDDFDDILFS EHQMSKIKKS EEISVEREKE IQQVVESVNE LAQIMKDLSA LVIDQGTIVD RIDYNIQNVA STVEDGLKQL QKAERTQRSG GMVKCASVLV
301: ILCFIMLVLL ILKEIIF

Best Arabidopsis Sequence Match ( AT3G05710.2 )
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L

Arabidopsis Description

SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.