Factsheet for PGSC0003DMT400063615

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 5
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004414
PGSC0003DMT400005756
PGSC0003DMT400006183
PGSC0003DMT400007431
PGSC0003DMT400010554
PGSC0003DMT400013052
PGSC0003DMT400020315
PGSC0003DMT400025743
PGSC0003DMT400027147
PGSC0003DMT400027379
PGSC0003DMT400031937
PGSC0003DMT400039421
PGSC0003DMT400041313
PGSC0003DMT400045338
PGSC0003DMT400046201
PGSC0003DMT400047710
PGSC0003DMT400048945
PGSC0003DMT400049608
PGSC0003DMT400049836
PGSC0003DMT400050219
PGSC0003DMT400051640
PGSC0003DMT400052643
PGSC0003DMT400052955
PGSC0003DMT400053000
PGSC0003DMT400054543
PGSC0003DMT400056142
PGSC0003DMT400059349
PGSC0003DMT400059492
PGSC0003DMT400060449
PGSC0003DMT400062735
PGSC0003DMT400063101
PGSC0003DMT400063904
PGSC0003DMT400064385
PGSC0003DMT400065105
PGSC0003DMT400065339
PGSC0003DMT400067873
PGSC0003DMT400069384
PGSC0003DMT400077257
PGSC0003DMT400077604
PGSC0003DMT400078129
PGSC0003DMT400078146
PGSC0003DMT400079142
PGSC0003DMT400081324

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26980.1	PGSC0003DMT400046201	AT1G02780.1	24556609
AT5G26980.1	PGSC0003DMT400081324	AT1G02780.1	24556609
AT5G26980.1	PGSC0003DMT400006183	AT1G14320.1	24556609
AT5G26980.1	PGSC0003DMT400078129	AT1G14320.1	24556609
AT5G26980.1	PGSC0003DMT400039421	AT1G27400.1	24556609
AT5G26980.1	PGSC0003DMT400069384	AT1G27400.1	24556609
AT5G26980.1	PGSC0003DMT400013052	AT1G58380.1	24556609
AT5G26980.1	PGSC0003DMT400063904	AT1G58380.1	24556609
AT5G26980.1	PGSC0003DMT400079142	AT1G58380.1	24556609
AT5G26980.1	PGSC0003DMT400052955	AT2G17360.1	24556609
AT5G26980.1	PGSC0003DMT400054543	AT2G17360.1	24556609
AT5G26980.1	PGSC0003DMT400049608	AT2G18020.1	24556609
AT5G26980.1	PGSC0003DMT400056142	AT2G18020.1	24556609
AT5G26980.1	PGSC0003DMT400064385	AT2G18020.1	24556609
AT5G26980.1	PGSC0003DMT400048945	AT2G39390.1	24556609
AT5G26980.1	PGSC0003DMT400060449	AT2G39390.1	24556609
AT5G26980.1	PGSC0003DMT400077604	AT2G39390.1	24556609
AT5G26980.1	PGSC0003DMT400078146	AT2G39390.1	24556609
AT5G26980.1	PGSC0003DMT400053000	AT2G40510.1	24556609
AT5G26980.1	PGSC0003DMT400059492	AT2G40510.1	24556609
AT5G26980.1	PGSC0003DMT400062735	AT2G40510.1	24556609
AT5G26980.1	PGSC0003DMT400065105	AT2G40510.1	24556609
AT5G26980.1	PGSC0003DMT400020315	AT2G42740.1	24556609
AT5G26980.1	PGSC0003DMT400027379	AT2G42740.1	24556609
AT5G26980.1	PGSC0003DMT400052643	AT2G42740.1	24556609
AT5G26980.1	PGSC0003DMT400067873	AT2G42740.1	24556609
AT5G26980.1	PGSC0003DMT400041313	AT3G02080.1	24556609
AT5G26980.1	PGSC0003DMT400063101	AT3G02080.1	24556609
AT5G26980.1	PGSC0003DMT400010554	AT3G04230.1	24556609
AT5G26980.1	PGSC0003DMT400077257	AT3G04230.1	24556609
AT5G26980.1	PGSC0003DMT400049836	AT3G04920.1	24556609
AT5G26980.1	PGSC0003DMT400051640	AT3G04920.1	24556609
AT5G26980.1	PGSC0003DMT400025743	AT4G24190.1	24556609
AT5G26980.1	PGSC0003DMT400004414	AT5G02960.1	24556609
AT5G26980.1	PGSC0003DMT400027147	AT5G02960.1	24556609
AT5G26980.1	PGSC0003DMT400045338	AT5G02960.1	24556609
AT5G26980.1	PGSC0003DMT400065339	AT5G02960.1	24556609
AT5G26980.1	PGSC0003DMT400005756	AT5G13300.1	15743878
AT5G26980.1	PGSC0003DMT400007431	AT5G15200.1	24556609
AT5G26980.1	PGSC0003DMT400059349	AT5G15200.1	24556609
AT5G26980.1	PGSC0003DMT400031937	AT5G28540.1	24556609
AT5G26980.1	PGSC0003DMT400047710	AT5G28540.1	24556609
AT5G26980.1	PGSC0003DMT400050219	AT5G39510.1	10888666
AT5G26980.1	PGSC0003DMT400041313	AT5G61170.1	24556609
AT5G26980.1	PGSC0003DMT400063101	AT5G61170.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100170.2.1	Tomato	mitochondrion	86.92	98.46
KRG92945	Soybean	mitochondrion	72.75	81.9
VIT_14s0060g01540.t01	Wine grape	mitochondrion	71.39	80.12
KRH33850	Soybean	endoplasmic reticulum	71.12	80.06
CDY05193	Canola	mitochondrion	67.03	77.6
Bra040527.1-P	Field mustard	mitochondrion	67.03	77.36
CDY18808	Canola	mitochondrion	66.76	77.04
Bra039417.1-P	Field mustard	mitochondrion	66.48	76.97
CDY27747	Canola	mitochondrion	66.48	76.97
AT5G26980.1	Thale cress	mitochondrion	67.03	76.4
AT3G05710.2	Thale cress	mitochondrion	68.12	75.53
TraesCS7D01G044300.1	Wheat	cytosol	48.5	74.79
Zm00001d013996_P003	Maize	mitochondrion	64.85	74.38
OQU86127	Sorghum	mitochondrion	65.94	74.23
Zm00001d039404_P001	Maize	plasma membrane	64.85	73.68
Os06t0116300-01	Rice	plasma membrane	66.21	73.64
GSMUA_Achr11P...	Banana	mitochondrion	65.12	73.54
GSMUA_Achr10P...	Banana	mitochondrion	65.4	72.73
TraesCS7A01G049200.1	Wheat	mitochondrion	64.85	72.56
GSMUA_Achr4P18460_001	Banana	mitochondrion	63.49	69.55
HORVU7Hr1G008670.5	Barley	mitochondrion	64.58	65.47
EER87742	Sorghum	mitochondrion	41.42	63.87
TraesCS4A01G435000.1	Wheat	mitochondrion	56.95	63.72
Zm00001d045530_P001	Maize	cytosol	15.26	62.22
PGSC0003DMT400081334	Potato	mitochondrion	50.41	57.81
HORVU7Hr1G008640.2	Barley	mitochondrion	40.05	56.54

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:102593977	MapMan:22.7.1.4	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	UniProt:M1CAW4	EnsemblPlantsGene:PGSC0003DMG400024732	PGSC:PGSC0003DMG400024732
EnsemblPlants:PGSC0003DMT400063615	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF83	SMART:SM00397
SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI000295CEA5	SEG:seg	:	:	:

Description

Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400024732]

Coordinates

chr1:+:77874632..77879656

Molecular Weight (calculated)

40911.3 Da

IEP (calculated)

8.633

GRAVY (calculated)

-0.357

Length

367 amino acids

Sequence
(BLAST)

001: MASRNRTLVF RKYRDALRSV RIPAGSSPST SSGHGSGPVI ELATTSLLNP NRSYAPLSTE DPGTSSNGTV TVGLPPAWVD LSDEITANVQ RVRTKMSELA
101: KAHAKALMPS FGDGKEDQHR IEALTHEITD LLKRSEKKLQ RLSAAGPSED SNVRKNVQRS LATDLQSLSM ELRRKQSTYL KRLQQQKEGP DGVDLEMNLN
201: GSHSRRDDDD LDDLGFNEHQ MAKLKKSEAF TVEREREIQQ VVESVNDLAQ IMKDLSVLVI DQGTIVDRID HNIQNVASTV EDGLKQLKKV SLSFLHCHSN
301: SQKFPSLQSS VMFSSLRRSF HLMLCLGLIE LQAERSQKRG GMVMCATVLV IMCFIMLVLL ILKEIIF

Best Arabidopsis Sequence Match ( AT3G05710.2 )
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L

Arabidopsis Description

SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.