Factsheet for PGSC0003DMT400081334

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007954
PGSC0003DMT400013305
PGSC0003DMT400015117
PGSC0003DMT400015118
PGSC0003DMT400015122
PGSC0003DMT400020315
PGSC0003DMT400025743
PGSC0003DMT400027379
PGSC0003DMT400029800
PGSC0003DMT400039421
PGSC0003DMT400046201
PGSC0003DMT400047177
PGSC0003DMT400049608
PGSC0003DMT400049836
PGSC0003DMT400051640
PGSC0003DMT400052643
PGSC0003DMT400055827
PGSC0003DMT400056142
PGSC0003DMT400061021
PGSC0003DMT400064385
PGSC0003DMT400067873
PGSC0003DMT400069384
PGSC0003DMT400081324

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02195.1	PGSC0003DMT400046201	AT1G02780.1	24556609
AT4G02195.1	PGSC0003DMT400081324	AT1G02780.1	24556609
AT4G02195.1	PGSC0003DMT400061021	AT1G25260.1	24556609
AT4G02195.1	PGSC0003DMT400039421	AT1G27400.1	24556609
AT4G02195.1	PGSC0003DMT400069384	AT1G27400.1	24556609
AT4G02195.1	PGSC0003DMT400049608	AT2G18020.1	24556609
AT4G02195.1	PGSC0003DMT400056142	AT2G18020.1	24556609
AT4G02195.1	PGSC0003DMT400064385	AT2G18020.1	24556609
AT4G02195.1	PGSC0003DMT400020315	AT2G42740.1	24556609
AT4G02195.1	PGSC0003DMT400027379	AT2G42740.1	24556609
AT4G02195.1	PGSC0003DMT400052643	AT2G42740.1	24556609
AT4G02195.1	PGSC0003DMT400067873	AT2G42740.1	24556609
AT4G02195.1	PGSC0003DMT400049836	AT3G04920.1	24556609
AT4G02195.1	PGSC0003DMT400051640	AT3G04920.1	24556609
AT4G02195.1	PGSC0003DMT400029800	AT3G12030.1	24556609
AT4G02195.1	PGSC0003DMT400013305	AT3G48930.1	24556609
AT4G02195.1	PGSC0003DMT400015117	AT3G48930.1	24556609
AT4G02195.1	PGSC0003DMT400015118	AT3G48930.1	24556609
AT4G02195.1	PGSC0003DMT400015122	AT3G48930.1	24556609
AT4G02195.1	PGSC0003DMT400007954	AT4G18060.1	24556609
AT4G02195.1	PGSC0003DMT400025743	AT4G24190.1	24556609
AT4G02195.1	PGSC0003DMT400047177	AT4G28250.1	24556609
AT4G02195.1	PGSC0003DMT400055827	AT4G28250.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075530.2.1	Tomato	cytosol, mitochondrion	86.88	87.15
VIT_07s0005g01000.t01	Wine grape	mitochondrion	62.81	63.21
KRH68233	Soybean	plastid	60.0	60.0
KRG96492	Soybean	plastid	59.69	58.95
Bra036287.1-P	Field mustard	cytosol, mitochondrion	52.81	58.68
Zm00001d039404_P001	Maize	plasma membrane	58.44	57.89
OQU86127	Sorghum	mitochondrion	58.75	57.67
Zm00001d013996_P003	Maize	mitochondrion	57.5	57.5
TraesCS7D01G044300.1	Wheat	cytosol	42.5	57.14
TraesCS7A01G049200.1	Wheat	mitochondrion	58.12	56.71
Zm00001d045530_P001	Maize	cytosol	15.94	56.67
Os06t0116300-01	Rice	plasma membrane	57.81	56.06
GSMUA_Achr11P...	Banana	mitochondrion	56.25	55.38
CDY22037	Canola	mitochondrion	54.38	54.04
CDY52786	Canola	mitochondrion	54.06	53.73
GSMUA_Achr10P...	Banana	mitochondrion	55.31	53.64
GSMUA_Achr4P18460_001	Banana	mitochondrion	55.0	52.54
AT4G02195.1	Thale cress	cytosol, mitochondrion, plastid	52.81	52.32
HORVU7Hr1G008670.5	Barley	mitochondrion	58.44	51.66
PGSC0003DMT400063615	Potato	mitochondrion	57.81	50.41
TraesCS4A01G435000.1	Wheat	mitochondrion	51.56	50.3
HORVU7Hr1G008640.2	Barley	mitochondrion	40.62	50.0
EER87742	Sorghum	mitochondrion	36.88	49.58
CDX97432	Canola	extracellular, vacuole	0.62	7.69

Protein Annotations

Gene3D:1.20.58.70	EntrezGene:102582914	MapMan:22.7.1.4	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005802	GO:GO:0006810	GO:GO:0006886	GO:GO:0006950	GO:GO:0007030	GO:GO:0007034
GO:GO:0008150	GO:GO:0009306	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	GO:GO:1900150	InterPro:IPR000727	UniProt:M1D4L3
EnsemblPlantsGene:PGSC0003DMG400031799	PGSC:PGSC0003DMG400031799	EnsemblPlants:PGSC0003DMT400081334	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF83	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	InterPro:T_SNARE_dom	UniParc:UPI000294F0EF	:	:	:

Description

Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400031799]

Coordinates

chr9:+:53021633..53025794

Molecular Weight (calculated)

36149.8 Da

IEP (calculated)

5.719

GRAVY (calculated)

-0.466

Length

320 amino acids

Sequence
(BLAST)

001: MATRNRIRVF QSYRDTLNEN RIPFTSSNDS GGPVIEMATT SFLNSNRSYA PLSTEDDLGP STSRDAFTVG LPPAWVDVSE EVAASIHQSQ VKLAELKKCH
101: AKALTPSFGD GREDQNVIEV LTMEITDILR KSEKRLQKLS ASGSCEDSNV RKNVQRSLAT DLQNLSVELR RMQSLYLKQL RQQSEAHDGL DLEMNEKKSS
201: FLDDNFNDVG FTELQMATGQ KDEQFTAERE REIRQVLKSV NELSQIMKDL SVLVIDQGTI VDRIDHNVQS VSASVEEGFK QLQKVSLALS CFLSRYVSLM
301: CAHTLQLSKY TCIYITHYYK

Best Arabidopsis Sequence Match ( AT5G26980.1 )
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPLSSSSLT GTRSGGVGPV IEMASTSLLN PNRSYAPIST EDPGTSSKGA ITVGLPPAWV DVSEEISVNI QRARTKMAEL
101: GKAHAKALMP SFGDGKEDQH NIESLTQEIT FLLKKSEKQL QRLSASGPSE DSNVRKNVQR SLATDLQLLS MELRKKQSTY LKRLRQQKED GMDLEMNLSR
201: NRYRPEEDDF GDMLNEHQMS KIKKSEEVSV EREKEIQQVV ESVNDLAQIM KDLSALVIDQ GTIVDRIDYN IENVATTVED GLKQLQKAER TQRHGGMVKC
301: ASVLVILCFI MLLLLILKEI FL

Arabidopsis Description

SYP41Syntaxin-41 [Source:UniProtKB/Swiss-Prot;Acc:O65359]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.